RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 RIOX1Q9H6W3 641 aa20.55■□□□□ 0.88
SMARCD3-212ENST00000485610 FEM1BQ9UK73 627 aa20.55■□□□□ 0.88
SMARCD3-212ENST00000485610 ABT1Q9ULW3 272 aaKnown RBP20.55■□□□□ 0.88
SMARCD3-212ENST00000485610 A0A0G2JMZ2 1700 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 DEXIO95424 95 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 SLC16A2P36021 539 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 SYDE2Q5VT97 1194 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 RGMBQ6NW40 437 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 GADL1Q6ZQY3 521 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 RASAL3Q86YV0 1011 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 WASF1Q92558 559 aa20.54■□□□□ 0.88
SMARCD3-212ENST00000485610 FDPSP14324 419 aaKnown RBP20.53■□□□□ 0.88
SMARCD3-212ENST00000485610 ZNF157P51786 506 aaPredicted RBP20.53■□□□□ 0.88
SMARCD3-212ENST00000485610 ADGRF4Q8IZF3 695 aa20.53■□□□□ 0.88
SMARCD3-212ENST00000485610 RRP36Q96EU6 259 aaKnown RBP20.53■□□□□ 0.88
SMARCD3-212ENST00000485610 GTF2A2P52657 109 aa20.52■□□□□ 0.88
SMARCD3-212ENST00000485610 FASTKD5Q7L8L6 764 aaKnown RBP20.52■□□□□ 0.88
SMARCD3-212ENST00000485610 HHIPL1Q96JK4 782 aa20.52■□□□□ 0.88
SMARCD3-212ENST00000485610 SLF1Q9BQI6 1058 aa20.52■□□□□ 0.88
SMARCD3-212ENST00000485610 JMJD4Q9H9V9 463 aa20.52■□□□□ 0.88
SMARCD3-212ENST00000485610 SEC63Q9UGP8 760 aaKnown RBP20.52■□□□□ 0.88
SMARCD3-212ENST00000485610 V9GY48 417 aaPredicted RBP20.52■□□□□ 0.88
SMARCD3-212ENST00000485610 SMCHD1A6NHR9 2005 aa20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 FLOT1O75955 427 aa20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 CETPP11597 493 aa20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 PDCP20941 246 aa20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 MTMR8Q96EF0 704 aa20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 PRR12Q9ULL5 1215 aa20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 AGTPBP1Q9UPW5 1226 aa20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 RBBP6Q7Z6E9 1792 aaKnown RBP20.51■□□□□ 0.87
SMARCD3-212ENST00000485610 hCG_1642624A0A1W2PR95 340 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L15C9J2P7 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L13C9JLJ4 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L11C9JVI0 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L18D6R9N7 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L22D6RA61 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L17D6RBQ6 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L19D6RCP7 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L20D6RJB6 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 SLC10A3P09131 477 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 USP17L24Q0WX57 530 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 MOGSQ13724 837 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 TREML2Q5T2D2 321 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 HOMER1Q86YM7 354 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 PIBF1Q8WXW3 757 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 KIFC2Q96AC6 838 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 PIGSQ96S52 555 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 ALG1Q9BT22 464 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 VAT1LQ9HCJ6 419 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 FBXO28Q9NVF7 368 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 PPP1R9AQ9ULJ8 1098 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 MYPNQ86TC9 1320 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 SCG2P13521 617 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 DDIT3P35638 169 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 APLP1P51693 650 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 MKRN3Q13064 507 aaKnown RBP20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 PABPC4Q13310 644 aaKnown RBP eCLIP20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 PKN1Q16512 942 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 CDC37Q16543 378 aaPredicted RBP20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 PFKFB3Q16875 520 aaPredicted RBP20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 CATSPERGQ6ZRH7 1159 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 PRPF38AQ8NAV1 312 aaKnown RBP20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 MS4A4AQ96JQ5 239 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 CREBZFQ9NS37 354 aa20.5■□□□□ 0.87
SMARCD3-212ENST00000485610 CCL15-CCL14A0A0B4J2E2 113 aa20.49■□□□□ 0.87
SMARCD3-212ENST00000485610 ZBTB5O15062 677 aa20.49■□□□□ 0.87
SMARCD3-212ENST00000485610 HOXA7P31268 230 aaPredicted RBP20.49■□□□□ 0.87
SMARCD3-212ENST00000485610 CCL15Q16663 113 aa20.49■□□□□ 0.87
SMARCD3-212ENST00000485610 CCDC102AQ96A19 550 aa20.49■□□□□ 0.87
SMARCD3-212ENST00000485610 MYH15Q9Y2K3 1946 aa20.49■□□□□ 0.87
SMARCD3-212ENST00000485610 PNMA6FA0A0J9YX94 578 aa20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 hCG_1984214I3L0E3 225 aa20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 QRICH1Q2TAL8 776 aa20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 LARP1BQ659C4 914 aaKnown RBP20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 SAMD1Q6SPF0 538 aaPredicted RBP20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 ZNF713Q8N859 430 aaPredicted RBP20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 C8orf76Q96K31 380 aa20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 AIFM3Q96NN9 605 aa20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 RANBP17Q9H2T7 1088 aaKnown RBP20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 CIZ1Q9ULV3 898 aaPredicted RBP20.48■□□□□ 0.87
SMARCD3-212ENST00000485610 FDX1P10109 184 aa20.47■□□□□ 0.87
SMARCD3-212ENST00000485610 PDIA4P13667 645 aaKnown RBP20.47■□□□□ 0.87
SMARCD3-212ENST00000485610 XBP1P17861 261 aa20.47■□□□□ 0.87
SMARCD3-212ENST00000485610 IRX3P78415 501 aaPredicted RBP20.47■□□□□ 0.87
SMARCD3-212ENST00000485610 COG2Q14746 738 aa20.47■□□□□ 0.87
SMARCD3-212ENST00000485610 RGS22Q8NE09 1264 aa20.47■□□□□ 0.87
SMARCD3-212ENST00000485610 BRI3BPQ8WY22 251 aa20.47■□□□□ 0.87
SMARCD3-212ENST00000485610 MANSC4A6NHS7 340 aaPredicted RBP20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 SYT1P21579 422 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 DSG3P32926 999 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 FOSBP53539 338 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 TRIM29Q14134 588 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 WWC2Q6AWC2 1192 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 GPAT2Q6NUI2 795 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 HEATR3Q7Z4Q2 680 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 FAM177A1Q8N128 213 aaPredicted RBP20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 GPKOWQ92917 476 aaPredicted RBP eCLIP20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 SLC45A1Q9Y2W3 748 aa20.46■□□□□ 0.87
SMARCD3-212ENST00000485610 SPDYE16A6NNV3 312 aaPredicted RBP20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 FAM155AB1AL88 458 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms