RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ZNF281Q9Y2X9 895 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 MEIS1O00470 390 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 SYN1P17600 705 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 LRRFIP1Q32MZ4 808 aaKnown RBP5.61□□□□□ -1.51
VPS50-216ENST00000484954 BBS9Q3SYG4 887 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 TDRD10Q5VZ19 366 aaKnown RBP5.61□□□□□ -1.51
VPS50-216ENST00000484954 FBXW10Q5XX13 1052 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 PPFIBP1Q86W92 1011 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 NT5DC4Q86YG4 428 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 CCDC120Q96HB5 630 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 FERD3LQ96RJ6 166 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 GINM1Q9NU53 330 aa5.61□□□□□ -1.51
VPS50-216ENST00000484954 TMEM82A0PJX8 343 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 NOTOA8MTQ0 251 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 SHOXO15266 292 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 FKTNO75072 461 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 RAC2P15153 192 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 CCNFP41002 786 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 CTSKP43235 329 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 KRTAP10-2P60368 255 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 LSRQ86X29 649 aaPredicted RBP5.6□□□□□ -1.51
VPS50-216ENST00000484954 ZNF654Q8IZM8 581 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 DAGLBQ8NCG7 672 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 PDZD8Q8NEN9 1154 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 LINC01599Q8WXQ3 324 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 SLC26A8Q96RN1 970 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 MKRN2Q9H000 416 aaKnown RBP5.6□□□□□ -1.51
VPS50-216ENST00000484954 ASCC2Q9H1I8 757 aaPredicted RBP5.6□□□□□ -1.51
VPS50-216ENST00000484954 FAM86C1Q9NVL1 165 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 GFOD1Q9NXC2 390 aa5.6□□□□□ -1.51
VPS50-216ENST00000484954 SIGLEC6O43699 453 aa5.59□□□□□ -1.51
VPS50-216ENST00000484954 SYPP08247 313 aa5.59□□□□□ -1.51
VPS50-216ENST00000484954 RPL10P27635 214 aaKnown RBP5.59□□□□□ -1.51
VPS50-216ENST00000484954 RAD51AP2Q09MP3 1159 aa5.59□□□□□ -1.51
VPS50-216ENST00000484954 NFIXQ14938 502 aa5.59□□□□□ -1.51
VPS50-216ENST00000484954 ZNF655Q8N720 491 aaPredicted RBP5.59□□□□□ -1.51
VPS50-216ENST00000484954 ENOX1Q8TC92 643 aaKnown RBP5.59□□□□□ -1.51
VPS50-216ENST00000484954 SUCOQ9UBS9 1254 aaKnown RBP5.59□□□□□ -1.51
VPS50-216ENST00000484954 TCFL5Q9UL49 500 aa5.59□□□□□ -1.51
VPS50-216ENST00000484954 EFR3BQ9Y2G0 817 aa5.59□□□□□ -1.51
VPS50-216ENST00000484954 PSPNO60542 156 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 USP2O75604 605 aaPredicted RBP5.58□□□□□ -1.52
VPS50-216ENST00000484954 AUHQ13825 339 aaKnown RBP5.58□□□□□ -1.52
VPS50-216ENST00000484954 DCAF15Q66K64 600 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 INTS3Q68E01 1043 aaKnown RBP5.58□□□□□ -1.52
VPS50-216ENST00000484954 UNC5AQ6ZN44 842 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 RNF111Q6ZNA4 994 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 WAPLQ7Z5K2 1190 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 PRRT2Q7Z6L0 340 aaPredicted RBP5.58□□□□□ -1.52
VPS50-216ENST00000484954 SHISA4Q96DD7 197 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 CHST7Q9NS84 486 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 FBXL21Q9UKT6 434 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.58□□□□□ -1.52
VPS50-216ENST00000484954 ADAMTS20P59510 1910 aa5.58□□□□□ -1.52
VPS50-216ENST00000484954 LTBP3Q9NS15 1303 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 IMPDH2P12268 514 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 CEBPAP49715 358 aaPredicted RBP5.57□□□□□ -1.52
VPS50-216ENST00000484954 PMS1P54277 932 aaKnown RBP5.57□□□□□ -1.52
VPS50-216ENST00000484954 KIR3DS1Q14943 382 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 AXDND1Q5T1B0 1012 aaPredicted RBP5.57□□□□□ -1.52
VPS50-216ENST00000484954 CRTC3Q6UUV7 619 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 RBBP8NLQ8NC74 664 aaPredicted RBP5.57□□□□□ -1.52
VPS50-216ENST00000484954 LINC00116Q8NCU8 138 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 DHX38Q92620 1227 aaKnown RBP5.57□□□□□ -1.52
VPS50-216ENST00000484954 ZNF428Q96B54 188 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 KCNC2Q96PR1 638 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 TM9SF2Q99805 663 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 PCDHB12Q9Y5F1 795 aa5.57□□□□□ -1.52
VPS50-216ENST00000484954 FITM1A5D6W6 292 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 TP53P04637 393 aaPredicted RBP5.56□□□□□ -1.52
VPS50-216ENST00000484954 GUCY2CP25092 1073 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 SOX9P48436 509 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 PCBP3P57721 371 aaKnown RBP5.56□□□□□ -1.52
VPS50-216ENST00000484954 NR0B2Q15466 257 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 SKOR2Q2VWA4 1001 aaPredicted RBP5.56□□□□□ -1.52
VPS50-216ENST00000484954 SIRT2Q8IXJ6 389 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 CCDC144CPQ8IYA2 1237 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 C7orf61Q8IZ16 206 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 OXR1Q8N573 874 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 TAB3Q8N5C8 712 aaPredicted RBP5.56□□□□□ -1.52
VPS50-216ENST00000484954 RASGRP4Q8TDF6 673 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 GPRASP2Q96D09 838 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 MAP6Q96JE9 813 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 HHIPL1Q96JK4 782 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 ACBD3Q9H3P7 528 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 TMPRSS5Q9H3S3 457 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 GPR160Q9UJ42 338 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 ZMYM5Q9UJ78 669 aa5.56□□□□□ -1.52
VPS50-216ENST00000484954 GJA8P48165 433 aa5.55□□□□□ -1.52
VPS50-216ENST00000484954 DUSP4Q13115 394 aa5.55□□□□□ -1.52
VPS50-216ENST00000484954 LILRA2Q8N149 483 aa5.55□□□□□ -1.52
VPS50-216ENST00000484954 ANKS4BQ8N8V4 417 aa5.55□□□□□ -1.52
VPS50-216ENST00000484954 BRF1Q92994 677 aa5.55□□□□□ -1.52
VPS50-216ENST00000484954 DHRS1Q96LJ7 313 aa5.55□□□□□ -1.52
VPS50-216ENST00000484954 PLCD4Q9BRC7 762 aa5.55□□□□□ -1.52
VPS50-216ENST00000484954 YBX2Q9Y2T7 364 aaKnown RBP5.55□□□□□ -1.52
VPS50-216ENST00000484954 SSU72P8A0A1W2PR75 194 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 TRIM13O60858 407 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 ZNF205O95201 554 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 NASPP49321 788 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms