RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 P2RX7Q99572 595 aaKnown RBP9.62□□□□□ -0.87
USP54-212ENST00000480210 MORF4L1Q9UBU8 362 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 ATP2A1O14983 1001 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 DHX16O60231 1041 aaKnown RBP9.61□□□□□ -0.87
USP54-212ENST00000480210 ST18O60284 1047 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 SLC25A27O95847 323 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 BCRP11274 1271 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 CTCFP49711 727 aaPredicted RBP9.61□□□□□ -0.87
USP54-212ENST00000480210 NEK4P51957 841 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 IKQ13123 557 aaPredicted RBP9.61□□□□□ -0.87
USP54-212ENST00000480210 CRHR2Q13324 411 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 TKFCQ3LXA3 575 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 KIAA1755Q5JYT7 1200 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 APOA5Q6Q788 366 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 FANCBQ8NB91 859 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 GPRC5AQ8NFJ5 357 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 NKX2-3Q8TAU0 364 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 NUP133Q8WUM0 1156 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 BRF1Q92994 677 aa9.61□□□□□ -0.87
USP54-212ENST00000480210 ZSCAN31Q96LW9 406 aaPredicted RBP9.61□□□□□ -0.87
USP54-212ENST00000480210 RBM27Q9P2N5 1060 aaKnown RBP9.61□□□□□ -0.87
USP54-212ENST00000480210 KLF18A0A0U1RQI7 1052 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 SPDYE16A6NNV3 312 aaPredicted RBP9.6□□□□□ -0.87
USP54-212ENST00000480210 KLRF2D3W0D1 207 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 GPR25O00155 361 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 VWA5AO00534 786 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 FKTNO75072 461 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 HOXD10P28358 340 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 SP3Q02447 781 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 SYDE2Q5VT97 1194 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 CPLX2Q6PUV4 134 aaKnown RBP9.6□□□□□ -0.87
USP54-212ENST00000480210 KCTD1Q719H9 257 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 SAMD3Q8N6K7 520 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 SHCBP1Q8NEM2 672 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 ERO1AQ96HE7 468 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 LRRC2Q9BYS8 371 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 RIOX1Q9H6W3 641 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 SLC38A10Q9HBR0 1119 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 MAD2L2Q9UI95 211 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 ISY1Q9ULR0 285 aaKnown RBP9.6□□□□□ -0.87
USP54-212ENST00000480210 CASP8AP2Q9UKL3 1982 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 NID2Q14112 1375 aa9.6□□□□□ -0.87
USP54-212ENST00000480210 A0A0G2JMZ2 1700 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 ADGRA2Q96PE1 1338 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 STRNO43815 780 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 TBC1D8O95759 1140 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 HSPA1AP0DMV8 641 aaKnown RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 HSPA1BP0DMV9 641 aaKnown RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 CYP2C8P10632 490 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 MAPK4P31152 587 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 STAT3P40763 770 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 METAP2P50579 478 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP54-212ENST00000480210 PRMT2P55345 433 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 ERVK-9P63128 1117 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 ERVK-24P63145 666 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 DGKZQ13574 1117 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 TOB2Q14106 344 aaPredicted RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 RTN1Q16799 776 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 TEX2Q8IWB9 1127 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 CCAR1Q8IX12 1150 aaKnown RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 KIFC2Q96AC6 838 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 SPZ1Q9BXG8 430 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 UPF3BQ9BZI7 483 aaKnown RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 RANBP17Q9H2T7 1088 aaKnown RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 MROH8Q9H579 483 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 GPCPD1Q9NPB8 672 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 SH2B1Q9NRF2 756 aaPredicted RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 RBPJLQ9UBG7 517 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 DAXXQ9UER7 740 aaPredicted RBP9.59□□□□□ -0.87
USP54-212ENST00000480210 FBXO40Q9UH90 709 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 PRR12Q9ULL5 1215 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 MTMR7Q9Y216 660 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 SMCHD1A6NHR9 2005 aa9.59□□□□□ -0.87
USP54-212ENST00000480210 GOLGA8AA7E2F4 631 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 GOLGA8BA8MQT2 603 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 hCG_1984214I3L0E3 225 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 CDKL5O76039 1030 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 CPA1P15085 419 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 PDIA3P30101 505 aaKnown RBP9.58□□□□□ -0.88
USP54-212ENST00000480210 APOBRQ0VD83 1088 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP54-212ENST00000480210 MICU3Q86XE3 530 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 RIOX2Q8IUF8 465 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 ADGRF4Q8IZF3 695 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 FAM177A1Q8N128 213 aaPredicted RBP9.58□□□□□ -0.88
USP54-212ENST00000480210 ANKRD13CQ8N6S4 541 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 ZNF713Q8N859 430 aaPredicted RBP9.58□□□□□ -0.88
USP54-212ENST00000480210 CHST13Q8NET6 341 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 ATG4CQ96DT6 458 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 MTMR8Q96EF0 704 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 TCEANC2Q96MN5 208 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 NUP88Q99567 741 aaPredicted RBP9.58□□□□□ -0.88
USP54-212ENST00000480210 KIF2CQ99661 725 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 TEX13BQ9BXU2 312 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 SPATC1LQ9H0A9 340 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 SLKQ9H2G2 1235 aaPredicted RBP9.58□□□□□ -0.88
USP54-212ENST00000480210 SENP2Q9HC62 589 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 PRDM10Q9NQV6 1147 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 MAP3K20Q9NYL2 800 aaKnown RBP9.58□□□□□ -0.88
USP54-212ENST00000480210 CPA4Q9UI42 421 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms