RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PRKAB2O43741 272 aa20.7■□□□□ 0.9
VIM-204ENST00000478746 DUSP11O75319 330 aaKnown RBP20.7■□□□□ 0.9
VIM-204ENST00000478746 SNAI1O95863 264 aaPredicted RBP20.7■□□□□ 0.9
VIM-204ENST00000478746 CDK7P50613 346 aa20.7■□□□□ 0.9
VIM-204ENST00000478746 AMOTL1Q8IY63 956 aa20.7■□□□□ 0.9
VIM-204ENST00000478746 TMEM199Q8N511 208 aa20.7■□□□□ 0.9
VIM-204ENST00000478746 REPS2Q8NFH8 660 aa20.7■□□□□ 0.9
VIM-204ENST00000478746 DNAJC2Q99543 621 aaKnown RBP20.7■□□□□ 0.9
VIM-204ENST00000478746 THEGQ9P2T0 379 aa20.7■□□□□ 0.9
VIM-204ENST00000478746 ZHX1Q9UKY1 873 aaPredicted RBP20.7■□□□□ 0.9
VIM-204ENST00000478746 CSF2RAP15509 400 aa20.69■□□□□ 0.9
VIM-204ENST00000478746 MRPS5P82675 430 aaKnown RBP20.69■□□□□ 0.9
VIM-204ENST00000478746 FAM83BQ5T0W9 1011 aa20.69■□□□□ 0.9
VIM-204ENST00000478746 C12orf60Q5U649 245 aa20.69■□□□□ 0.9
VIM-204ENST00000478746 RASIP1Q5U651 963 aa20.69■□□□□ 0.9
VIM-204ENST00000478746 CEP85Q6P2H3 762 aa20.69■□□□□ 0.9
VIM-204ENST00000478746 PCSK9Q8NBP7 692 aaKnown RBP20.69■□□□□ 0.9
VIM-204ENST00000478746 RAPGEFL1Q9UHV5 662 aa20.69■□□□□ 0.9
VIM-204ENST00000478746 SYNGAP1Q96PV0 1343 aa20.69■□□□□ 0.9
VIM-204ENST00000478746 CYP2D7A0A087X1C5 515 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 USP17L12C9JPN9 530 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 USP17L21D6R901 530 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 SMIM22K7EJ46 135 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 C6orf222P0C671 652 aaPredicted RBP20.68■□□□□ 0.9
VIM-204ENST00000478746 ACRP10323 421 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 CCDC85BQ15834 202 aaPredicted RBP20.68■□□□□ 0.9
VIM-204ENST00000478746 HSP90AB4PQ58FF6 505 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 MAMDC4Q6UXC1 1216 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 C16orf86Q6ZW13 317 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 ZNF365Q70YC5 407 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 SPC25Q9HBM1 224 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 MSRAQ9UJ68 235 aa20.68■□□□□ 0.9
VIM-204ENST00000478746 MYADML2A6NDP7 307 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 ARVCFO00192 962 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 MBD4O95243 580 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 ASGR1P07306 291 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 IGFBP4P22692 258 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 CST5P28325 142 aaPredicted RBP20.67■□□□□ 0.9
VIM-204ENST00000478746 ACVR2BQ13705 512 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 RHPN1Q8TCX5 695 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 ADAMTS19Q8TE59 1207 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.67■□□□□ 0.9
VIM-204ENST00000478746 TEX13BQ9BXU2 312 aa20.67■□□□□ 0.9
VIM-204ENST00000478746 A0A0U1RQG5 324 aaPredicted RBP20.66■□□□□ 0.9
VIM-204ENST00000478746 TLR3O15455 904 aaKnown RBP20.66■□□□□ 0.9
VIM-204ENST00000478746 RLBP1P12271 317 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 SLC4A3P48751 1232 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 IRX5P78411 483 aaPredicted RBP20.66■□□□□ 0.9
VIM-204ENST00000478746 GNASQ5JWF2 1037 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 SNRNP48Q6IEG0 339 aaKnown RBP20.66■□□□□ 0.9
VIM-204ENST00000478746 PSRC1Q6PGN9 363 aaPredicted RBP20.66■□□□□ 0.9
VIM-204ENST00000478746 CLASRPQ8N2M8 674 aaKnown RBP20.66■□□□□ 0.9
VIM-204ENST00000478746 IL27Q8NEV9 243 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 DDRGK1Q96HY6 314 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 SLF1Q9BQI6 1058 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 PPP1R12CQ9BZL4 782 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 RIPK3Q9Y572 518 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 BAZ2AQ9UIF9 1905 aaKnown RBP20.66■□□□□ 0.9
VIM-204ENST00000478746 NCOR1O75376 2440 aa20.66■□□□□ 0.9
VIM-204ENST00000478746 DNAJC25-GNG10A0A024R161 153 aa20.65■□□□□ 0.9
VIM-204ENST00000478746 APBB1O00213 710 aa20.65■□□□□ 0.9
VIM-204ENST00000478746 IFIT2P09913 472 aaKnown RBP20.65■□□□□ 0.9
VIM-204ENST00000478746 ADD2P35612 726 aa20.65■□□□□ 0.9
VIM-204ENST00000478746 ADGRE1Q14246 886 aa20.65■□□□□ 0.9
VIM-204ENST00000478746 RAB30Q15771 203 aa20.65■□□□□ 0.9
VIM-204ENST00000478746 SLFNL1Q499Z3 407 aa20.65■□□□□ 0.9
VIM-204ENST00000478746 ZNF467Q7Z7K2 595 aaPredicted RBP20.65■□□□□ 0.9
VIM-204ENST00000478746 UHRF1Q96T88 793 aaPredicted RBP20.65■□□□□ 0.9
VIM-204ENST00000478746 CHD9Q3L8U1 2897 aa20.65■□□□□ 0.9
VIM-204ENST00000478746 GJA9P57773 515 aa20.64■□□□□ 0.89
VIM-204ENST00000478746 CCDC144BQ3MJ40 725 aa20.64■□□□□ 0.89
VIM-204ENST00000478746 FAM126BQ8IXS8 530 aa20.64■□□□□ 0.89
VIM-204ENST00000478746 PRPF38AQ8NAV1 312 aaKnown RBP20.64■□□□□ 0.89
VIM-204ENST00000478746 NUP88Q99567 741 aaPredicted RBP20.64■□□□□ 0.89
VIM-204ENST00000478746 BCL11AQ9H165 835 aa20.64■□□□□ 0.89
VIM-204ENST00000478746 ABHD16BQ9H3Z7 469 aa20.64■□□□□ 0.89
VIM-204ENST00000478746 IL23AQ9NPF7 189 aa20.64■□□□□ 0.89
VIM-204ENST00000478746 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.64■□□□□ 0.89
VIM-204ENST00000478746 FGBP02675 491 aa20.63■□□□□ 0.89
VIM-204ENST00000478746 CYP2C18P33260 490 aa20.63■□□□□ 0.89
VIM-204ENST00000478746 CPXCR1Q8N123 301 aa20.63■□□□□ 0.89
VIM-204ENST00000478746 HERVK_113Q902F9 699 aa20.63■□□□□ 0.89
VIM-204ENST00000478746 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.63■□□□□ 0.89
VIM-204ENST00000478746 UPF3AQ9H1J1 476 aaKnown RBP20.63■□□□□ 0.89
VIM-204ENST00000478746 MTIF3Q9H2K0 278 aaKnown RBP20.63■□□□□ 0.89
VIM-204ENST00000478746 NKX2-4Q9H2Z4 354 aa20.63■□□□□ 0.89
VIM-204ENST00000478746 SLC28A3Q9HAS3 691 aa20.63■□□□□ 0.89
VIM-204ENST00000478746 PAG1Q9NWQ8 432 aa20.63■□□□□ 0.89
VIM-204ENST00000478746 CTDP1Q9Y5B0 961 aaPredicted RBP20.63■□□□□ 0.89
VIM-204ENST00000478746 ADCY6O43306 1168 aa20.62■□□□□ 0.89
VIM-204ENST00000478746 ZBED4O75132 1171 aa20.62■□□□□ 0.89
VIM-204ENST00000478746 CTR9Q6PD62 1173 aa20.62■□□□□ 0.89
VIM-204ENST00000478746 ANKRD35Q8N283 1001 aa20.62■□□□□ 0.89
VIM-204ENST00000478746 KIF1BPQ96EK5 621 aa20.62■□□□□ 0.89
VIM-204ENST00000478746 TSPYL2Q9H2G4 693 aaPredicted RBP20.62■□□□□ 0.89
VIM-204ENST00000478746 BOLA2Q9H3K6 86 aa20.62■□□□□ 0.89
VIM-204ENST00000478746 SLC4A4Q9Y6R1 1079 aa20.62■□□□□ 0.89
VIM-204ENST00000478746 BDP1A6H8Y1 2624 aa20.61■□□□□ 0.89
VIM-204ENST00000478746 F5H6K3 240 aa20.61■□□□□ 0.89
VIM-204ENST00000478746 ATP2A1O14983 1001 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms