RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ZNF280AP59817 542 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 ALDH1L2Q3SY69 923 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 EPHA10Q5JZY3 1008 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 STRIP1Q5VSL9 837 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 KRT26Q7Z3Y9 468 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 DZIP1LQ8IYY4 767 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 TRMT2AQ8IZ69 625 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 ALDH16A1Q8IZ83 802 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 SSH1Q8WYL5 1049 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 GMLQ99445 158 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 ZNF408Q9H9D4 720 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 UTYO14607 1347 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 MYO3BQ8WXR4 1341 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 ECM29Q5VYK3 1845 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 ZBTB42B2RXF5 422 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 NBPF7P0C2Y1 421 aaPredicted RBP8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 KLRK1P26718 216 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 DACT2Q5SW24 774 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 IGF2-ASQ6U949 168 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 LDHAL6AQ6ZMR3 332 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 C15orf52Q6ZUT6 534 aaKnown RBP8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 SAPCD2Q86UD0 394 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 USP48Q86UV5 1035 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 SUCLG2Q96I99 432 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 HHIPL1Q96JK4 782 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 CAPNS2Q96L46 248 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 MYOZ2Q9NPC6 264 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 CNNM1Q9NRU3 951 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 SMC4Q9NTJ3 1288 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 GGA3Q9NZ52 723 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 FRRS1LQ9P0K9 344 aa8.54□□□□□ -1.04
CCDC88A-213ENST00000476903 TAF5LO75529 589 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 NFKB1P19838 968 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 CD97P48960 835 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 MMP14P50281 582 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 MAP2K1Q02750 393 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 CCINQ13939 588 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 COL13A1Q5TAT6 717 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 TTLL5Q6EMB2 1281 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 CYP4F22Q6NT55 531 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 STAG2Q8N3U4 1231 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 OGFOD1Q8N543 542 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 KAZALD1Q96I82 304 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 ZNF594Q96JF6 807 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 C2orf49Q9BVC5 232 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 CD209Q9NNX6 404 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 PCMTD2Q9NV79 361 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 PITPNM2Q9BZ72 1349 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 IRS2Q9Y4H2 1338 aa8.53□□□□□ -1.04
CCDC88A-213ENST00000476903 ARAP2Q8WZ64 1704 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 ADM5C9JUS6 153 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 DLL1O00548 723 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 FOXN1O15353 648 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 PLIN1O60240 522 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 FSTP19883 344 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 GRM1Q13255 1194 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 RABL6Q3YEC7 729 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 PERM1Q5SV97 790 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 ANGEL2Q5VTE6 544 aaKnown RBP8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 IER5Q5VY09 327 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 ZNF804AQ7Z570 1209 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 FAM35AQ86V20 835 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 TRIM50Q86XT4 487 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 PLEKHM2Q8IWE5 1019 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 TSEN2Q8NCE0 465 aaKnown RBP8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 TTC9Q92623 222 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 MXD3Q9BW11 206 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 KRTAP4-7Q9BYR0 210 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 BICC1Q9H694 974 aaKnown RBP8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 ZFATQ9P243 1243 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 HDAC9Q9UKV0 1011 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 COG6Q9Y2V7 657 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 MYH13Q9UKX3 1938 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 ASTN2O75129 1339 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 MROH5Q6ZUA9 1318 aa8.52□□□□□ -1.05
CCDC88A-213ENST00000476903 PAPPA2Q9BXP8 1791 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 AKAP11Q9UKA4 1901 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 SNAP23O00161 211 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 PAX4O43316 350 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 MAP3K6O95382 1288 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 MED26O95402 600 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 IL1R1P14778 569 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 MAP2K2P36507 400 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 CTCFP49711 727 aaPredicted RBP8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 UBE4AQ14139 1066 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 MCM6Q14566 821 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 LCE1DQ5T752 114 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 ANKRD44Q8N8A2 993 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 C2orf69Q8N8R5 385 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 API5Q9BZZ5 524 aaKnown RBP8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 USP44Q9H0E7 712 aa8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 GBA2Q9HCG7 927 aaPredicted RBP8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 ARID1BQ8NFD5 2236 aaPredicted RBP8.51□□□□□ -1.05
CCDC88A-213ENST00000476903 PPP1R12BO60237 982 aaPredicted RBP8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 CPB1P15086 417 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 SSTR4P31391 388 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 HUNKP57058 714 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 FKBP1AP62942 108 aaKnown RBP8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 DIEXFQ68CQ4 756 aaKnown RBP8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 DLK2Q6UY11 383 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms