RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PUM3Q15397 648 aaKnown RBP6.04□□□□□ -1.44
USP4-209ENST00000475873 ZNF792Q3KQV3 632 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 KIAA1755Q5JYT7 1200 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 ADSSL1Q8N142 457 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 SHCBP1Q8NEM2 672 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 GLT1D1Q96MS3 346 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 TINF2Q9BSI4 451 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 UPF3AQ9H1J1 476 aaKnown RBP6.04□□□□□ -1.44
USP4-209ENST00000475873 HERC5Q9UII4 1024 aaKnown RBP6.04□□□□□ -1.44
USP4-209ENST00000475873 MTUS1Q9ULD2 1270 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 SPEGQ15772 3267 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 PARP14Q460N5 1801 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 ASTN1O14525 1302 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 MAST4O15021 2626 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 GH2P01242 217 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 IFIT1P09914 478 aaKnown RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 ARP10275 920 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 ZXDAP98168 799 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 MECOMQ03112 1051 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 DLX2Q07687 328 aaPredicted RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 FKBP5Q13451 457 aaPredicted RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 SMAD2Q15796 467 aaKnown RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 RABL6Q3YEC7 729 aaPredicted RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 DGLUCYQ7Z3D6 616 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 FRMD5Q7Z6J6 570 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 DEFB128Q7Z7B8 93 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 SUGP1Q8IWZ8 645 aaKnown RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 ABRAQ8N0Z2 381 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 TSR2Q969E8 191 aaKnown RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 SLC9A7Q96T83 725 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 BICC1Q9H694 974 aaKnown RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 RPAP3Q9H6T3 665 aaPredicted RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 COL11A1P12107 1806 aaPredicted RBP6.03□□□□□ -1.44
USP4-209ENST00000475873 ZZEF1O43149 2961 aa6.03□□□□□ -1.44
USP4-209ENST00000475873 LINC01553A4QN01 128 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 TLR3O15455 904 aaKnown RBP6.02□□□□□ -1.45
USP4-209ENST00000475873 DUSP11O75319 330 aaKnown RBP6.02□□□□□ -1.45
USP4-209ENST00000475873 NBPF7P0C2Y1 421 aaPredicted RBP6.02□□□□□ -1.45
USP4-209ENST00000475873 C6orf222P0C671 652 aaPredicted RBP6.02□□□□□ -1.45
USP4-209ENST00000475873 ADORA1P30542 326 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 GJA9P57773 515 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 ERVK-21P61565 698 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 GNAI1P63096 354 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 BEX3Q00994 111 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 RASGRF1Q13972 1273 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 ST3GAL2Q16842 350 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 TCTN1Q2MV58 587 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 PUS10Q3MIT2 529 aaKnown RBP6.02□□□□□ -1.45
USP4-209ENST00000475873 CXCL17Q6UXB2 119 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 ATG9AQ7Z3C6 839 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 DZIP1Q86YF9 867 aaKnown RBP6.02□□□□□ -1.45
USP4-209ENST00000475873 LPIN2Q92539 896 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 RUNDC1Q96C34 613 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 STK31Q9BXU1 1019 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 UPF3BQ9BZI7 483 aaKnown RBP6.02□□□□□ -1.45
USP4-209ENST00000475873 KIAA1683Q9H0B3 1180 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 FRYQ5TBA9 3013 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 TANC1Q9C0D5 1861 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 FOCADQ5VW36 1801 aa6.02□□□□□ -1.45
USP4-209ENST00000475873 A0A1W2PRG0 241 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 MBTPS2O43462 519 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 GALR2O43603 387 aaPredicted RBP6.01□□□□□ -1.45
USP4-209ENST00000475873 CYP2C9P11712 490 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 GUCY1A2P33402 732 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 RFX5P48382 616 aaPredicted RBP6.01□□□□□ -1.45
USP4-209ENST00000475873 PSMC6P62333 389 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 NKX3-2P78367 333 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 DEFB103AP81534 67 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 GPNMBQ14956 572 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 CLUL1Q15846 466 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 PKN1Q16512 942 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 CTC1Q2NKJ3 1217 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 TCEAL5Q5H9L2 206 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 GNASQ5JWF2 1037 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 NCAPG2Q86XI2 1143 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 RPUSD2Q8IZ73 545 aaKnown RBP6.01□□□□□ -1.45
USP4-209ENST00000475873 PHOSPHO2Q8TCD6 241 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 SH3RF3Q8TEJ3 882 aaPredicted RBP6.01□□□□□ -1.45
USP4-209ENST00000475873 VTI1AQ96AJ9 217 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 ATG4CQ96DT6 458 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 PABPC5Q96DU9 382 aaKnown RBP6.01□□□□□ -1.45
USP4-209ENST00000475873 FGD4Q96M96 766 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 KATNBL1Q9H079 304 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 PI4KBQ9UBF8 816 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 ABCF2Q9UG63 623 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 PALD1Q9ULE6 856 aa6.01□□□□□ -1.45
USP4-209ENST00000475873 TNKSO95271 1327 aa6□□□□□ -1.45
USP4-209ENST00000475873 CLSPNQ9HAW4 1339 aa6□□□□□ -1.45
USP4-209ENST00000475873 C11orf97A0A1B0GVM6 126 aaPredicted RBP6□□□□□ -1.45
USP4-209ENST00000475873 ZBTB22O15209 634 aa6□□□□□ -1.45
USP4-209ENST00000475873 TBX10O75333 385 aa6□□□□□ -1.45
USP4-209ENST00000475873 PFKMP08237 780 aa6□□□□□ -1.45
USP4-209ENST00000475873 FCER1AP12319 257 aa6□□□□□ -1.45
USP4-209ENST00000475873 WDR5P61964 334 aaKnown RBP6□□□□□ -1.45
USP4-209ENST00000475873 ITGA7Q13683 1181 aa6□□□□□ -1.45
USP4-209ENST00000475873 TMEM132BQ14DG7 1078 aa6□□□□□ -1.45
USP4-209ENST00000475873 ACAP1Q15027 740 aa6□□□□□ -1.45
USP4-209ENST00000475873 PI16Q6UXB8 463 aa6□□□□□ -1.45
USP4-209ENST00000475873 TEX11Q8IYF3 940 aa6□□□□□ -1.45
USP4-209ENST00000475873 CRACR2BQ8N4Y2 399 aaPredicted RBP6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms