RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 FER1L6Q2WGJ9 1857 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-222ENST00000474655 CCDC194A0A1B0GVG4 234 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 DPEP1P16444 411 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 RBM5P52756 815 aaKnown RBP eCLIP13.94□□□□□ -0.18
SYNE1-222ENST00000474655 NCAPHQ15003 741 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 GPATCH4Q5T3I0 446 aaKnown RBP13.94□□□□□ -0.18
SYNE1-222ENST00000474655 SH3RF1Q7Z6J0 888 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 TRIML1Q8N9V2 468 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 SYMPKQ92797 1274 aaKnown RBP13.94□□□□□ -0.18
SYNE1-222ENST00000474655 EPSTI1Q96J88 318 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 PIGSQ96S52 555 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 C6orf50Q9HD87 102 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 NYAP2Q9P242 653 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 A0A087X0B3 334 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 BIN1O00499 593 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 LAD1O00515 517 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 SLFN14P0C7P3 912 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 CACNB3P54284 484 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 NAPAP54920 295 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 TCP10Q12799 353 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 IL17AQ16552 155 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 CFAP100Q494V2 611 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 RSBN1LQ6PCB5 846 aaPredicted RBP13.93□□□□□ -0.18
SYNE1-222ENST00000474655 KRT25Q7Z3Z0 450 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 LRRC47Q8N1G4 583 aaKnown RBP13.93□□□□□ -0.18
SYNE1-222ENST00000474655 MTMR8Q96EF0 704 aa13.93□□□□□ -0.18
SYNE1-222ENST00000474655 PRMT6Q96LA8 375 aaPredicted RBP13.93□□□□□ -0.18
SYNE1-222ENST00000474655 PYM1Q9BRP8 204 aaKnown RBP13.93□□□□□ -0.18
SYNE1-222ENST00000474655 SMCO2A6NFE2 343 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 SMTNL1A8MU46 457 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 FOXN1O15353 648 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 MCM7P33993 719 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 LONP1P36776 959 aaKnown RBP13.92□□□□□ -0.18
SYNE1-222ENST00000474655 CERKLQ49MI3 558 aaPredicted RBP13.92□□□□□ -0.18
SYNE1-222ENST00000474655 SOGA3Q5TF21 947 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 CLEC10AQ8IUN9 316 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 RASGRP4Q8TDF6 673 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 CCDC34Q96HJ3 373 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 UBA5Q9GZZ9 404 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 TDRD3Q9H7E2 651 aaKnown RBP13.92□□□□□ -0.18
SYNE1-222ENST00000474655 KANSL2Q9H9L4 492 aa13.92□□□□□ -0.18
SYNE1-222ENST00000474655 VWA3AA6NCI4 1184 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 BMP6P22004 513 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 PRPHP41219 470 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 EIF6P56537 245 aaKnown RBP13.91□□□□□ -0.18
SYNE1-222ENST00000474655 TGFB2P61812 414 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 ORC2Q13416 577 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-222ENST00000474655 E2F4Q16254 413 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 PPP1R18Q6NYC8 613 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 FRMPD2Q68DX3 1309 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-222ENST00000474655 PNMA6FA0A0J9YX94 578 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 SPDYE2BA6NHP3 402 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 MYO1BO43795 1136 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 SPDYE6P0CI01 402 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 MORC3Q14149 939 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 TMEM179Q6ZVK1 233 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 HOMER1Q86YM7 354 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 CCDC125Q86Z20 511 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 SIAH1Q8IUQ4 282 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 PDILTQ8N807 584 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 HSD3B7Q9H2F3 369 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 JMJD4Q9H9V9 463 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 MAN1B1Q9UKM7 699 aa13.91□□□□□ -0.18
SYNE1-222ENST00000474655 PSMD14O00487 310 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 MPHOSPH10O00566 681 aaKnown RBP13.9□□□□□ -0.18
SYNE1-222ENST00000474655 PRR29P0C7W0 189 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 SLURP2P0DP57 97 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 NONOQ15233 471 aaKnown RBP eCLIP13.9□□□□□ -0.18
SYNE1-222ENST00000474655 INF2Q27J81 1249 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 CT47A1Q5JQC4 288 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-222ENST00000474655 ADGRF4Q8IZF3 695 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 LARGE2Q8N3Y3 721 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 MLKLQ8NB16 471 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 MTMR14Q8NCE2 650 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 DCAF4Q8WV16 495 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 SMARCE1Q969G3 411 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 KCNF1Q9H3M0 494 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 TTC12Q9H892 705 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-222ENST00000474655 VAT1LQ9HCJ6 419 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 SYNPO2Q9UMS6 1093 aa13.9□□□□□ -0.18
SYNE1-222ENST00000474655 EEF2P13639 858 aaKnown RBP13.89□□□□□ -0.19
SYNE1-222ENST00000474655 MYL5Q02045 173 aa13.89□□□□□ -0.19
SYNE1-222ENST00000474655 FKBP1CQ5VVH2 108 aa13.89□□□□□ -0.19
SYNE1-222ENST00000474655 ZSCAN29Q8IWY8 852 aaPredicted RBP13.89□□□□□ -0.19
SYNE1-222ENST00000474655 REXO1Q8N1G1 1221 aaKnown RBP13.89□□□□□ -0.19
SYNE1-222ENST00000474655 IQUBQ8NA54 791 aa13.89□□□□□ -0.19
SYNE1-222ENST00000474655 SPC24Q8NBT2 197 aa13.89□□□□□ -0.19
SYNE1-222ENST00000474655 DHX58Q96C10 678 aa13.89□□□□□ -0.19
SYNE1-222ENST00000474655 PAGE5Q96GU1 130 aa13.89□□□□□ -0.19
SYNE1-222ENST00000474655 HERC5Q9UII4 1024 aaKnown RBP13.89□□□□□ -0.19
SYNE1-222ENST00000474655 SMC2O95347 1197 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 TPM4P67936 248 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 DPYDQ12882 1025 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 ISM2Q6H9L7 571 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 PDXDC2PQ6P474 469 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 GMCL1P1Q8NEA9 526 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 AGBL3Q8NEM8 1001 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 ZNF830Q96NB3 372 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-222ENST00000474655 GSDMAQ96QA5 445 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms