RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 KRT2P35908 639 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 SLC16A2P36021 539 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 JAG1P78504 1218 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 PPATQ06203 517 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 PABPC4Q13310 644 aaKnown RBP eCLIP11.83□□□□□ -0.525e-7■□□□□ 10
PRPF38A-202ENST00000474048 KRT40Q6A162 431 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 BRAPQ7Z569 592 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 NBPF11Q86T75 865 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 ADGRF4Q8IZF3 695 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 FBXO18Q8NFZ0 1043 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 BICD2Q8TD16 824 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 KIFC2Q96AC6 838 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 ZNF396Q96N95 335 aaPredicted RBP11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 NUP88Q99567 741 aaPredicted RBP11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 C6orf50Q9HD87 102 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 SH3GLB2Q9NR46 395 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 VPS54Q9P1Q0 977 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 PNMA2Q9UL42 364 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 SNCAIPQ9Y6H5 919 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 PNMA6FA0A0J9YX94 578 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 hCG_1642624A0A1W2PR95 340 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 ZBTB5O15062 677 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 FLOT1O75955 427 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 FDPSP14324 419 aaKnown RBP11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 GNA11P29992 359 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 HMGCS2P54868 508 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 CDC37Q16543 378 aaPredicted RBP11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 MAP3K11Q16584 847 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 PPP1R18Q6NYC8 613 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 GADL1Q6ZQY3 521 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 RASGRP2Q7LDG7 609 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 FERMT3Q86UX7 667 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 SMC1BQ8NDV3 1235 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 TNPO1Q92973 898 aaKnown RBP11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 PIGSQ96S52 555 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 SLF1Q9BQI6 1058 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 GLT8D2Q9H1C3 349 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 RIOX1Q9H6W3 641 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 NOL7Q9UMY1 257 aaKnown RBP11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 MTMR6Q9Y217 621 aa11.82□□□□□ -0.52
PRPF38A-202ENST00000474048 SPDYE5A6NIY4 337 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 DDX11L8A8MPP1 907 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 UBE2Q2LH0YL09 131 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 ZBED4O75132 1171 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 MMP1P03956 469 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 FDX1P10109 184 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 VCAM1P19320 739 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 KRT85P78386 507 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 PPIL2Q13356 520 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 PKP1Q13835 747 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 FOXD4L6Q3SYB3 417 aaPredicted RBP11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 TTBK2Q6IQ55 1244 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 GALNT17Q6IS24 598 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 DLK2Q6UY11 383 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 FOXD4L3Q6VB84 417 aaPredicted RBP11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 FASTKD5Q7L8L6 764 aaKnown RBP11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 FBXO11Q86XK2 927 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 SIAH1Q8IUQ4 282 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 PRPF38AQ8NAV1 312 aaKnown RBP11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 GPKOWQ92917 476 aaPredicted RBP eCLIP11.81□□□□□ -0.523e-7■□□□□ 9.9
PRPF38A-202ENST00000474048 OPTNQ96CV9 577 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 AMNQ9BXJ7 453 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 CPVLQ9H3G5 476 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 RPAP3Q9H6T3 665 aaPredicted RBP11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 BARHL2Q9NY43 387 aa11.81□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L15C9J2P7 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L13C9JLJ4 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L11C9JVI0 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L18D6R9N7 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L22D6RA61 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L17D6RBQ6 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L19D6RCP7 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L20D6RJB6 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 CXCL11O14625 94 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 PLA2G6O60733 806 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 ADCY7P51828 1080 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 IRX3P78415 501 aaPredicted RBP11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 USP17L24Q0WX57 530 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 FUT2Q10981 343 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 SNAPC2Q13487 334 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 MOB2Q70IA6 237 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 DIS3L2Q8IYB7 885 aaKnown RBP11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 CUL5Q93034 780 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 C12orf42Q96LP6 360 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 AIFM3Q96NN9 605 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 JMJD4Q9H9V9 463 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 CFAP45Q9UL16 551 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 PRR12Q9ULL5 1215 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 KCNJ14Q9UNX9 436 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 AFG3L2Q9Y4W6 797 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 PHIPQ8WWQ0 1821 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 MYH15Q9Y2K3 1946 aa11.8□□□□□ -0.52
PRPF38A-202ENST00000474048 BAZ2BQ9UIF8 2168 aaKnown RBP11.79□□□□□ -0.52
PRPF38A-202ENST00000474048 CCDC194A0A1B0GVG4 234 aa11.79□□□□□ -0.52
PRPF38A-202ENST00000474048 GOLGA6L4A6NEF3 574 aa11.79□□□□□ -0.52
PRPF38A-202ENST00000474048 CYTH3O43739 400 aa11.79□□□□□ -0.52
PRPF38A-202ENST00000474048 OSBPP22059 807 aa11.79□□□□□ -0.52
PRPF38A-202ENST00000474048 YY1P25490 414 aa11.79□□□□□ -0.52
PRPF38A-202ENST00000474048 MRPL12P52815 198 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms