RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 CHMP4CQ96CF2 233 aa17.8■□□□□ 0.44
LIMS1-212ENST00000474038 SLF1Q9BQI6 1058 aa17.8■□□□□ 0.44
LIMS1-212ENST00000474038 RPTORQ8N122 1335 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 MYH6P13533 1939 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 E7EWF7 191 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 PRKAR2AP13861 404 aaKnown RBP17.79■□□□□ 0.44
LIMS1-212ENST00000474038 PTPREP23469 700 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 SLC1A4P43007 532 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 MAP2K5Q13163 448 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 CCDC178Q5BJE1 867 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 MAP3K21Q5TCX8 1036 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 CYB5R4Q7L1T6 521 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 RASGRP2Q7LDG7 609 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 DGKHQ86XP1 1220 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 PRPF38AQ8NAV1 312 aaKnown RBP17.79■□□□□ 0.44
LIMS1-212ENST00000474038 ZSCAN10Q96SZ4 725 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-212ENST00000474038 APBA2Q99767 749 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 MOV10L1Q9BXT6 1211 aaKnown RBP17.79■□□□□ 0.44
LIMS1-212ENST00000474038 SPATC1LQ9H0A9 340 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 CRISPLD2Q9H0B8 497 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 HMX1Q9NP08 348 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-212ENST00000474038 FEM1BQ9UK73 627 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 MTMR7Q9Y216 660 aa17.79■□□□□ 0.44
LIMS1-212ENST00000474038 PLXNA1Q9UIW2 1896 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 VWA5AO00534 786 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 SLC27A2O14975 620 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 TRDNQ13061 729 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 TMEM132BQ14DG7 1078 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 NECTIN1Q15223 517 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 ENAHQ8N8S7 591 aaPredicted RBP17.78■□□□□ 0.44
LIMS1-212ENST00000474038 REPS2Q8NFH8 660 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 ANKS1AQ92625 1134 aa17.78■□□□□ 0.44
LIMS1-212ENST00000474038 TNKSO95271 1327 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 SLC15A5A6NIM6 579 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 TMEM232C9JQI7 657 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 CACNB2Q08289 660 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-212ENST00000474038 GRB14Q14449 540 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 PLS1Q14651 629 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 CREB3L3Q68CJ9 461 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 KCTD1Q719H9 257 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 TRMT44Q8IYL2 757 aaKnown RBP17.77■□□□□ 0.44
LIMS1-212ENST00000474038 NCOA7Q8NI08 942 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 DCAF4Q8WV16 495 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 DPF3Q92784 378 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 FLRT1Q9NZU1 646 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 ISY1Q9ULR0 285 aaKnown RBP17.77■□□□□ 0.44
LIMS1-212ENST00000474038 IVNS1ABPQ9Y6Y0 642 aa17.77■□□□□ 0.44
LIMS1-212ENST00000474038 ZNF236Q9UL36 1845 aa17.77■□□□□ 0.43
LIMS1-212ENST00000474038 CEP290O15078 2479 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 PLA2G6O60733 806 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 ERCC3P19447 782 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 STAT2P52630 851 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 RALYLQ86SE5 291 aaKnown RBP17.76■□□□□ 0.43
LIMS1-212ENST00000474038 SHCBP1Q8NEM2 672 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 NPLOC4Q8TAT6 608 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 DIS3LQ8TF46 1054 aaKnown RBP17.76■□□□□ 0.43
LIMS1-212ENST00000474038 CHURC1Q8WUH1 139 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 KIFC2Q96AC6 838 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 UBAC1Q9BSL1 405 aa17.76■□□□□ 0.43
LIMS1-212ENST00000474038 ZNF214Q9UL59 606 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-212ENST00000474038 BAZ2BQ9UIF8 2168 aaKnown RBP17.76■□□□□ 0.43
LIMS1-212ENST00000474038 H0YGN5 161 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 PDHBP11177 359 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 CCND3P30281 292 aaPredicted RBP17.75■□□□□ 0.43
LIMS1-212ENST00000474038 SEC23AQ15436 765 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 CCDC96Q2M329 555 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 FAM160B2Q86V87 743 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 PNMA1Q8ND90 353 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 PAWRQ96IZ0 340 aaKnown RBP17.75■□□□□ 0.43
LIMS1-212ENST00000474038 HTATIP2Q9BUP3 242 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 SLC38A10Q9HBR0 1119 aa17.75■□□□□ 0.43
LIMS1-212ENST00000474038 ZBED4O75132 1171 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 HOXC6P09630 235 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 SNHG28P0DPA3 235 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 STAT3P40763 770 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 IKQ13123 557 aaPredicted RBP17.74■□□□□ 0.43
LIMS1-212ENST00000474038 TTBK2Q6IQ55 1244 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 NCAPG2Q86XI2 1143 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 RIOX2Q8IUF8 465 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 MB21D2Q8IYB1 491 aaPredicted RBP17.74■□□□□ 0.43
LIMS1-212ENST00000474038 MROH8Q9H579 483 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 KAT14Q9H8E8 782 aa17.74■□□□□ 0.43
LIMS1-212ENST00000474038 FRMPD2Q68DX3 1309 aaPredicted RBP17.73■□□□□ 0.43
LIMS1-212ENST00000474038 ATP2A1O14983 1001 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 SLC34A2O95436 690 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 SLC25A27O95847 323 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 CAPN2P17655 700 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 ADORA2AP29274 412 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 ANTXR2P58335 489 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 ZNF543Q08ER8 600 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 IFIT1BQ5T764 474 aaKnown RBP17.73■□□□□ 0.43
LIMS1-212ENST00000474038 BTNL9Q6UXG8 535 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 CHST3Q7LGC8 479 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 TEX13BQ9BXU2 312 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 GPCPD1Q9NPB8 672 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 PRR12Q9ULL5 1215 aa17.73■□□□□ 0.43
LIMS1-212ENST00000474038 IFIT3O14879 490 aaKnown RBP17.72■□□□□ 0.43
LIMS1-212ENST00000474038 FDX1P10109 184 aa17.72■□□□□ 0.43
LIMS1-212ENST00000474038 SLC16A2P36021 539 aa17.72■□□□□ 0.43
LIMS1-212ENST00000474038 MNX1P50219 401 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms