RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 SLF1Q9BQI6 1058 aa6.86□□□□□ -1.31
HERC4-209ENST00000473533 GUCA1BQ9UMX6 200 aa6.86□□□□□ -1.31
HERC4-209ENST00000473533 PLCH1Q4KWH8 1693 aa6.86□□□□□ -1.31
HERC4-209ENST00000473533 SOS2Q07890 1332 aaPredicted RBP6.86□□□□□ -1.31
HERC4-209ENST00000473533 EBAG9O00559 213 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 PARP1P09874 1014 aaKnown RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 PAFAH1B1P43034 410 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 NNTQ13423 1086 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 SEC23AQ15436 765 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 MEA1Q16626 185 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 B4GALNT4Q76KP1 1039 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 GRAMD1CQ8IYS0 662 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 TRIM47Q96LD4 638 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 LRRC27Q9C0I9 530 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 NUCKS1Q9H1E3 243 aaKnown RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 VPS16Q9H269 839 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 EPC1Q9H2F5 836 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 EXOC1Q9NV70 894 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 ATXN2Q99700 1313 aaKnown RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 GOLGA6BA6NDN3 693 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 CPP00450 1065 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 GUCY1A2P33402 732 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 ERVK-24P63145 666 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 PTGDRQ13258 359 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 EMBQ6PCB8 327 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 TMTC3Q6ZXV5 915 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 MMGT1Q8N4V1 131 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 SECISBP2LQ93073 1101 aaKnown RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 RBM33Q96EV2 1170 aaKnown RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 EPSTI1Q96J88 318 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 TAB2Q9NYJ8 693 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 JRKLQ9Y4A0 524 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 BCORQ6W2J9 1755 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 ABCB11O95342 1321 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 RREB1Q92766 1687 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 GOLGA6CA6NDK9 693 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 GOLGA6DP0CG33 693 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 SCG2P13521 617 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 CD44P16070 742 aaKnown RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 TRIM21P19474 475 aaKnown RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 CYP7A1P22680 504 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 IL6STP40189 918 aaPredicted RBP6.85□□□□□ -1.31
HERC4-209ENST00000473533 PRPHP41219 470 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 EPHB4P54760 987 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 GRIN1Q05586 938 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 CHRNA2Q15822 529 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 E2F4Q16254 413 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 PDXDC2PQ6P474 469 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 DTHD1Q6ZMT9 781 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 ADSSL1Q8N142 457 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.85□□□□□ -1.312e-6■□□□□ 10.9
HERC4-209ENST00000473533 EDEM3Q9BZQ6 932 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 SENP2Q9HC62 589 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 GOLGA6AQ9NYA3 693 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 VPS54Q9P1Q0 977 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 HPCAL4Q9UM19 191 aa6.85□□□□□ -1.31
HERC4-209ENST00000473533 NUTM2BA6NNL0 878 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 NUTM2EB1AL46 878 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 PES1O00541 588 aaKnown RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 ORC4O43929 436 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 HSF2BPO75031 334 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 SRGNP10124 158 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 TNFRSF8P28908 595 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 UBA7P41226 1012 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 VAV2P52735 878 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 RASGRF1Q13972 1273 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 CCDC181Q5TID7 509 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 ICE2Q659A1 982 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 ZNF572Q7Z3I7 529 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 CCDC84Q86UT8 332 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 MED15Q96RN5 788 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 IRX2Q9BZI1 471 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 SHOX2O60902 331 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 ZNF174Q15697 407 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 COBLL1Q53SF7 1204 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 OXER1Q8TDS5 423 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 PCMTD1Q96MG8 357 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 CCDC85AQ96PX6 553 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 LZTS2Q9BRK4 669 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 CCSER1Q9C0I3 900 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 TCP11L1Q9NUJ3 509 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 DENND2AQ9ULE3 1009 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 V9GY48 417 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 XDHP47989 1333 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 COL5A2P05997 1499 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 CCDC194A0A1B0GVG4 234 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 SRRM3A6NNA2 597 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 MINDY4BA8MYZ0 360 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 KIAA0754O94854 1291 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 RHOBTB3O94955 611 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 FGRP09769 529 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 IDEP14735 1019 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 GTF2A1P52655 376 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 PFKFB3Q16875 520 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 CNNM4Q6P4Q7 775 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 CCNI2Q6ZMN8 369 aaPredicted RBP6.84□□□□□ -1.31
HERC4-209ENST00000473533 LCORLQ8N3X6 602 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 TNFRSF25Q93038 417 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 CCDC42Q96M95 316 aa6.84□□□□□ -1.31
HERC4-209ENST00000473533 TRERF1Q96PN7 1200 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms