RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 ITGB8P26012 769 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 ADCYAP1R1P41586 468 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 PDE1AP54750 535 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 PPARAQ07869 468 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 OLFML2BQ68BL8 750 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 B4GALNT3Q6L9W6 998 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 GIMAP6Q6P9H5 292 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 ZNF589Q86UQ0 364 aaPredicted RBP9.65□□□□□ -0.86
USP48-207ENST00000471752 EXOC6Q8TAG9 804 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 MKL1Q969V6 931 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 KIFC2Q96AC6 838 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 PURBQ96QR8 312 aaKnown RBP9.65□□□□□ -0.86
USP48-207ENST00000471752 MMP19Q99542 508 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 SLF1Q9BQI6 1058 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 MROH8Q9H579 483 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.65□□□□□ -0.86
USP48-207ENST00000471752 ROBO3Q96MS0 1386 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 TTC41PQ6P2S7 1318 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 TRIM43BA6NCK2 446 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 MYADML2A6NDP7 307 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 FCER1AP12319 257 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 MCCP23508 829 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 RTP1P59025 263 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 CNTN2Q02246 1040 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 LRRC41Q15345 812 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 SNRNP48Q6IEG0 339 aaKnown RBP9.64□□□□□ -0.87
USP48-207ENST00000471752 ZNF444Q8N0Y2 327 aaPredicted RBP9.64□□□□□ -0.87
USP48-207ENST00000471752 MB21D1Q8N884 522 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 NEDD1Q8NHV4 660 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 TRIM43Q96BQ3 446 aaPredicted RBP9.64□□□□□ -0.87
USP48-207ENST00000471752 AGBL1Q96MI9 1066 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 TINF2Q9BSI4 451 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 LNPKQ9C0E8 428 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 GOPCQ9HD26 462 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 MTMR7Q9Y216 660 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 ATP11BQ9Y2G3 1177 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 SMCHD1A6NHR9 2005 aa9.64□□□□□ -0.87
USP48-207ENST00000471752 ZNF536O15090 1300 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 TMEM232C9JQI7 657 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 SEPT4O43236 478 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 ZFYP08048 801 aaPredicted RBP9.63□□□□□ -0.87
USP48-207ENST00000471752 BMP8BP34820 402 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 NMIQ13287 307 aaPredicted RBP9.63□□□□□ -0.87
USP48-207ENST00000471752 SLFN13Q68D06 897 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 TTBK2Q6IQ55 1244 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 SLC39A5Q6ZMH5 540 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 KCTD1Q719H9 257 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 AMOTL1Q8IY63 956 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 ABRAQ8N0Z2 381 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 DDRGK1Q96HY6 314 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 GPATCH3Q96I76 525 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 UBE2OQ9C0C9 1292 aaKnown RBP9.63□□□□□ -0.87
USP48-207ENST00000471752 SH2D4AQ9H788 454 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 SLC38A10Q9HBR0 1119 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 HOMER2Q9NSB8 354 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 VCANP13611 3396 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 CDH23Q9H251 3354 aa9.63□□□□□ -0.87
USP48-207ENST00000471752 A0A0G2JMZ2 1700 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 ASTN1O14525 1302 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 DNAJC25-GNG10A0A024R161 153 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 SLC25A27O95847 323 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 FGAP02671 866 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 PRR29P0C7W0 189 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 GNAT2P19087 354 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 EPHB4P54760 987 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 HAND2P61296 217 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 TLE2Q04725 743 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 HDAC1Q13547 482 aaPredicted RBP9.62□□□□□ -0.87
USP48-207ENST00000471752 TRIM60Q495X7 471 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 C9orf50Q5SZB4 431 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 PRPF38AQ8NAV1 312 aaKnown RBP9.62□□□□□ -0.87
USP48-207ENST00000471752 NAPBQ9H115 298 aa9.62□□□□□ -0.87
USP48-207ENST00000471752 GREB1LQ9C091 1923 aaPredicted RBP9.62□□□□□ -0.87
USP48-207ENST00000471752 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.61□□□□□ -0.87
USP48-207ENST00000471752 SOWAHBA6NEL2 793 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 DNM1LO00429 736 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 ERC2O15083 957 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 TTLL1O95922 423 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 TSPY3P0CV98 308 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 TSPY8P0CW00 308 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 BMP3P12645 472 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 CAPN2P17655 700 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 SLC16A2P36021 539 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 IRX6P78412 446 aaPredicted RBP9.61□□□□□ -0.87
USP48-207ENST00000471752 KCTD2Q14681 263 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 MUM1L1Q5H9M0 696 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 CCDC174Q6PII3 467 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 PLEKHM2Q8IWE5 1019 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 BADQ92934 168 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 TEX13BQ9BXU2 312 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 IL25Q9H293 177 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 CPVLQ9H3G5 476 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 COL11A1P12107 1806 aaPredicted RBP9.61□□□□□ -0.87
USP48-207ENST00000471752 PARP14Q460N5 1801 aa9.61□□□□□ -0.87
USP48-207ENST00000471752 MYH7P12883 1935 aa9.6□□□□□ -0.87
USP48-207ENST00000471752 SPTBN5Q9NRC6 3674 aaKnown RBP9.6□□□□□ -0.87
USP48-207ENST00000471752 CTAGE5O15320 804 aa9.6□□□□□ -0.87
USP48-207ENST00000471752 RANBP6O60518 1105 aaKnown RBP9.6□□□□□ -0.87
USP48-207ENST00000471752 ZBED4O75132 1171 aa9.6□□□□□ -0.87
USP48-207ENST00000471752 ADAMTS4O75173 837 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms