RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 RPAP3Q9H6T3 665 aaPredicted RBP11.52□□□□□ -0.57
SF3A1-207ENST00000471342 TXNRD2Q9NNW7 524 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 V9GY48 417 aaPredicted RBP11.52□□□□□ -0.57
SF3A1-207ENST00000471342 STK36Q9NRP7 1315 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 MYH8P13535 1937 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 TMEM232C9JQI7 657 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 PARP1P09874 1014 aaKnown RBP11.51□□□□□ -0.57
SF3A1-207ENST00000471342 SLC1A4P43007 532 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 TM4SF4P48230 202 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 TTLL12Q14166 644 aaPredicted RBP11.51□□□□□ -0.57
SF3A1-207ENST00000471342 GPATCH4Q5T3I0 446 aaKnown RBP11.51□□□□□ -0.57
SF3A1-207ENST00000471342 OTUD7BQ6GQQ9 843 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 CYP4F22Q6NT55 531 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 CCDC82Q8N4S0 544 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 DNAJC5GQ8N7S2 189 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 CLEC4DQ8WXI8 215 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 TNFRSF25Q93038 417 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 RNF26Q9BY78 433 aaPredicted RBP11.51□□□□□ -0.57
SF3A1-207ENST00000471342 AS3MTQ9HBK9 375 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 SLC38A10Q9HBR0 1119 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 FOXD4L1Q9NU39 408 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 BTBD7Q9P203 1132 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 RBPJLQ9UBG7 517 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 ZNF214Q9UL59 606 aaPredicted RBP11.51□□□□□ -0.57
SF3A1-207ENST00000471342 PPP1R9AQ9ULJ8 1098 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 AGTPBP1Q9UPW5 1226 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 MTMR7Q9Y216 660 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 RIPK3Q9Y572 518 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 PARP14Q460N5 1801 aa11.51□□□□□ -0.57
SF3A1-207ENST00000471342 MYH4Q9Y623 1939 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 STXBP3O00186 592 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 VWA5AO00534 786 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 USP14P54578 494 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 GHRHRQ02643 423 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 MKRN3Q13064 507 aaKnown RBP11.5□□□□□ -0.57
SF3A1-207ENST00000471342 TMEM132BQ14DG7 1078 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 PFKFB3Q16875 520 aaPredicted RBP11.5□□□□□ -0.57
SF3A1-207ENST00000471342 QRICH1Q2TAL8 776 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 Q3C1V9 767 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 NOM1Q5C9Z4 860 aaKnown RBP11.5□□□□□ -0.57
SF3A1-207ENST00000471342 SYDE2Q5VT97 1194 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 WWC2Q6AWC2 1192 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 ATG4CQ96DT6 458 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 ASCC2Q9H1I8 757 aaPredicted RBP11.5□□□□□ -0.57
SF3A1-207ENST00000471342 GOPCQ9HD26 462 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 RBM28Q9NW13 759 aaKnown RBP11.5□□□□□ -0.57
SF3A1-207ENST00000471342 FEM1BQ9UK73 627 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 MTMR6Q9Y217 621 aa11.5□□□□□ -0.57
SF3A1-207ENST00000471342 A0A0G2JMZ2 1700 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 ATP2A1O14983 1001 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 AOC2O75106 756 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 GJB2P29033 226 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 ZNF157P51786 506 aaPredicted RBP11.49□□□□□ -0.57
SF3A1-207ENST00000471342 SNAPC2Q13487 334 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 EARS2Q5JPH6 523 aaKnown RBP11.49□□□□□ -0.57
SF3A1-207ENST00000471342 ANKRD23Q86SG2 305 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 HSCBQ8IWL3 235 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 TBC1D5Q92609 795 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 DDX11Q96FC9 970 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 SLC45A1Q9Y2W3 748 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 PCNTO95613 3336 aa11.49□□□□□ -0.57
SF3A1-207ENST00000471342 KIF28PB7ZC32 967 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L15C9J2P7 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L13C9JLJ4 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L11C9JVI0 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L18D6R9N7 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L22D6RA61 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L17D6RBQ6 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L19D6RCP7 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L20D6RJB6 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 ZBTB5O15062 677 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 CYP2C8P10632 490 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 SYT1P21579 422 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 KIF5BP33176 963 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 CLK2P49760 499 aaKnown RBP11.48□□□□□ -0.57
SF3A1-207ENST00000471342 VEGFBP49765 207 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 STAT2P52630 851 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 GTF2A2P52657 109 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 KIF23Q02241 960 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-207ENST00000471342 USP17L24Q0WX57 530 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 SPRYD3Q8NCJ5 442 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 CTCFLQ8NI51 663 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-207ENST00000471342 OXER1Q8TDS5 423 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 AGBL1Q96MI9 1066 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 LZTS2Q9BRK4 669 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 PHF20Q9BVI0 1012 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 SLC26A6Q9BXS9 759 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 ORC3Q9UBD5 711 aaPredicted RBP11.48□□□□□ -0.57
SF3A1-207ENST00000471342 MYPNQ86TC9 1320 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 THSD7BQ9C0I4 1608 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 SMCHD1A6NHR9 2005 aa11.48□□□□□ -0.57
SF3A1-207ENST00000471342 BAZ2BQ9UIF8 2168 aaKnown RBP11.47□□□□□ -0.57
SF3A1-207ENST00000471342 ASTN1O14525 1302 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CCL15-CCL14A0A0B4J2E2 113 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 PNMA6FA0A0J9YX94 578 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 WNT7AO00755 349 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 BCRP11274 1271 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CETPP11597 493 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CTGFP29279 349 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 GNAQP50148 359 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms