RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 HVCN1Q96D96 273 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 ZIM3Q96PE6 472 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 OSBPL7Q9BZF2 842 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 C14orf93Q9H972 538 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 NOP53Q9NZM5 478 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 LMCD1Q9NZU5 365 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 DACH1Q9UI36 760 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 WWC3Q9ULE0 1092 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 PA2G4Q9UQ80 394 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 SETD1AO15047 1707 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 MACROD2A1Z1Q3 448 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 FOXN1O15353 648 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 MFAP3LO75121 409 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 PPFIA2O75334 1257 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 CDKL5O76039 1030 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 CDC25AP30304 524 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 IL13P35225 146 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 MDH1P40925 334 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 CTCFP49711 727 aaPredicted RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 APLP1P51693 650 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 GUCY2FP51841 1108 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 VAV2P52735 878 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 POLE2P56282 527 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 PPARAQ07869 468 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 ENOX2Q16206 610 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 RRP12Q5JTH9 1297 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 CCDC129Q6ZRS4 1044 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 SPATA21Q7Z572 469 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 MYLK4Q86YV6 388 aaPredicted RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 HDAC7Q8WUI4 952 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 CCDC97Q96F63 343 aaPredicted RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 EDC3Q96F86 508 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 RPGRIP1Q96KN7 1286 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 LLPHQ9BRT6 129 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 RGL1Q9NZL6 768 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 MYO1AQ9UBC5 1043 aa4.71□□□□□ -1.66
VPS50-210ENST00000471188 DMGDHQ9UI17 866 aaKnown RBP4.71□□□□□ -1.66
VPS50-210ENST00000471188 SBNO1A3KN83 1393 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ATP7AQ04656 1500 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ERICH2A1L162 156 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 LRRD1A4D1F6 860 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 N4BP3O15049 544 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 AHCYL1O43865 530 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 SMNDC1O75940 238 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS50-210ENST00000471188 CTDNEP1O95476 244 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 KRT9P35527 623 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 FXR1P51114 621 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS50-210ENST00000471188 DNA2P51530 1060 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ELF3P78545 371 aaPredicted RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 AMPD2Q01433 879 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 DBN1Q16643 649 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 CYP26C1Q6V0L0 522 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 TRAPPC11Q7Z392 1133 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ARHGAP22Q7Z5H3 698 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 USHBP1Q8N6Y0 703 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 MAGEC3Q8TD91 643 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 LRRC1Q9BTT6 524 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 OSBPL1AQ9BXW6 950 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 TUBE1Q9UJT0 475 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 MROH7-TTC4A0A0A0MT08 1334 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 GMNCA6NCL1 334 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 GNPATO15228 680 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 COBLO75128 1261 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 TPP2P29144 1249 aaPredicted RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 ABCD1P33897 745 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 EPHB4P54760 987 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 HIC1Q14526 733 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 NR1I3Q14994 352 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 PUS10Q3MIT2 529 aaKnown RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 GKAP1Q5VSY0 366 aaPredicted RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 ALS2CLQ60I27 953 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 CWF19L1Q69YN2 538 aaKnown RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 MFN1Q8IWA4 741 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 CCDC170Q8IYT3 715 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 AFAP1Q8N556 730 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ARFGAP2Q8N6H7 521 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 AENQ8WTP8 325 aaKnown RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 MTRQ99707 1265 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 VPS16Q9H269 839 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 POLR3EQ9NVU0 708 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 CORO1CQ9ULV4 474 aaPredicted RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 PCDHGC5Q9Y5F6 944 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 EPN1Q9Y6I3 576 aaPredicted RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 NEDD4P46934 1319 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 CPS1P31327 1500 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 PNPLA6Q8IY17 1366 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 CARMIL3Q8ND23 1372 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 COQ9O75208 318 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 FESP07332 822 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 PDHA1P08559 390 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 FERP16591 822 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 TMOD1P28289 359 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 PCK1P35558 622 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 SCNN1BP51168 640 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ERVK-24P63145 666 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ROR2Q01974 943 aaKnown RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 TAF11Q15544 211 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 FAM133BQ5BKY9 247 aaKnown RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 SLC9C2Q5TAH2 1124 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 KDM7AQ6ZMT4 941 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms