RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.68□□□□□ -1.02
COL6A3-208ENST00000468792 CCDC194A0A1B0GVG4 234 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 AKR1B1P15121 316 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 VEGFAP15692 232 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-208ENST00000468792 ERCC5P28715 1186 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-208ENST00000468792 HOXA7P31268 230 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-208ENST00000468792 EN1Q05925 392 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-208ENST00000468792 ZNF543Q08ER8 600 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 MORC3Q14149 939 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 CCDC93Q567U6 631 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 MSL1Q68DK7 614 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 MCTP2Q6DN12 878 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 TYW1BQ6NUM6 668 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 OLFM4Q6UX06 510 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-208ENST00000468792 PIK3AP1Q6ZUJ8 805 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 CCDC125Q86Z20 511 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 TTLL6Q8N841 843 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 IQUBQ8NA54 791 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 MTMR14Q8NCE2 650 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 GTPBP4Q9BZE4 634 aaKnown RBP8.67□□□□□ -1.02
COL6A3-208ENST00000468792 CCSER1Q9C0I3 900 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 KANSL2Q9H9L4 492 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 DBNDD1Q9H9R9 158 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 MAGEF1Q9HAY2 307 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 KIF13BQ9NQT8 1826 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 PCDHA5Q9Y5H7 936 aa8.67□□□□□ -1.02
COL6A3-208ENST00000468792 SCN9AQ15858 1988 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 MYH8P13535 1937 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 PNMA6FA0A0J9YX94 578 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 hCG_1642624A0A1W2PR95 340 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 FAM205CA6NFA0 338 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 VIL1P09327 827 aaKnown RBP8.66□□□□□ -1.02
COL6A3-208ENST00000468792 PRR29P0C7W0 189 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 GSDMDP57764 484 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 TGFB2P61812 414 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 MYL5Q02045 173 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 GRIN1Q05586 938 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 NFIAQ12857 509 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 SF3B2Q13435 895 aaKnown RBP8.66□□□□□ -1.02
COL6A3-208ENST00000468792 PICALMQ13492 652 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 ZNF174Q15697 407 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 E2F4Q16254 413 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 USP17L2Q6R6M4 530 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 TMEM179Q6ZVK1 233 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 AOPEPQ8N6M6 819 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 ENOX1Q8TC92 643 aaKnown RBP8.66□□□□□ -1.02
COL6A3-208ENST00000468792 KIAA1524Q8TCG1 905 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 DCAF4Q8WV16 495 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 SMARCE1Q969G3 411 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 GMLQ99445 158 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 CUEDC2Q9H467 287 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 KCND1Q9NSA2 647 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 FAM198AQ9UFP1 575 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 SERTAD1Q9UHV2 236 aa8.66□□□□□ -1.02
COL6A3-208ENST00000468792 HERC5Q9UII4 1024 aaKnown RBP8.66□□□□□ -1.02
COL6A3-208ENST00000468792 BAZ2BQ9UIF8 2168 aaKnown RBP8.66□□□□□ -1.02
COL6A3-208ENST00000468792 SMCO2A6NFE2 343 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 USP17L5A8MUK1 530 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 F8W031 263 aaPredicted RBP8.65□□□□□ -1.02
COL6A3-208ENST00000468792 CBFA2T2O43439 604 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 SLC26A4O43511 780 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 KCNA3P22001 575 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 CHRNA5P30532 468 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 TXLNAP40222 546 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 KCNJ6P48051 423 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 SCNN1DP51172 638 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 NAPAP54920 295 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 DPYDQ12882 1025 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 PNOCQ13519 176 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 NONOQ15233 471 aaKnown RBP eCLIP8.65□□□□□ -1.02
COL6A3-208ENST00000468792 RSBN1LQ6PCB5 846 aaPredicted RBP8.65□□□□□ -1.02
COL6A3-208ENST00000468792 DTHD1Q6ZMT9 781 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 HEATR3Q7Z4Q2 680 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 KIAA0825Q8IV33 1275 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 GMCL1P1Q8NEA9 526 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 AGBL3Q8NEM8 1001 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 SYMPKQ92797 1274 aaKnown RBP8.65□□□□□ -1.02
COL6A3-208ENST00000468792 FBXW7Q969H0 707 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 PAGE5Q96GU1 130 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 NAP1L4Q99733 375 aaKnown RBP8.65□□□□□ -1.02
COL6A3-208ENST00000468792 MXD3Q9BW11 206 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 KCNQ5Q9NR82 932 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 CLIP2Q9UDT6 1046 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 MAN1B1Q9UKM7 699 aa8.65□□□□□ -1.02
COL6A3-208ENST00000468792 SIPA1L1O43166 1804 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 VWA3AA6NCI4 1184 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 YDJCA8MPS7 323 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 WNT7AO00755 349 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 ZBTB5O15062 677 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 PPIP5K2O43314 1243 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 GTPBP6O43824 516 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-208ENST00000468792 TBC1D12O60347 775 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 ATP2B1P20020 1258 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 BMP6P22004 513 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 CLK2P49760 499 aaKnown RBP8.64□□□□□ -1.03
COL6A3-208ENST00000468792 PDIA5Q14554 519 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 NOLC1Q14978 699 aaKnown RBP eCLIP8.64□□□□□ -1.03
COL6A3-208ENST00000468792 IL17AQ16552 155 aa8.64□□□□□ -1.03
COL6A3-208ENST00000468792 AOC3Q16853 763 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms