RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 DEFB123Q8N688 67 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 TOX2Q96NM4 488 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 XPNPEP3Q9NQH7 507 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 CLIP2Q9UDT6 1046 aa16.13■□□□□ 0.17
CHD3-207ENST00000466233 ATN1P54259 1190 aaPredicted RBP16.12■□□□□ 0.17
CHD3-207ENST00000466233 MDM2Q00987 491 aaPredicted RBP16.12■□□□□ 0.17
CHD3-207ENST00000466233 FAM47AQ5JRC9 791 aa16.12■□□□□ 0.17
CHD3-207ENST00000466233 PRAMEF19Q5SWL8 479 aa16.12■□□□□ 0.17
CHD3-207ENST00000466233 SNRNP48Q6IEG0 339 aaKnown RBP16.12■□□□□ 0.17
CHD3-207ENST00000466233 CEP95Q96GE4 821 aa16.12■□□□□ 0.17
CHD3-207ENST00000466233 GMCL1Q96IK5 515 aa16.12■□□□□ 0.17
CHD3-207ENST00000466233 MTMR10Q9NXD2 777 aa16.12■□□□□ 0.17
CHD3-207ENST00000466233 PCDHB15Q9Y5E8 787 aa16.12■□□□□ 0.17
CHD3-207ENST00000466233 TACC3Q9Y6A5 838 aa16.12■□□□□ 0.17
CHD3-207ENST00000466233 DNAH12Q6ZR08 3092 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 MOXD2PA6NHM9 499 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 M0R2C6 588 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 PGK2P07205 417 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 MX1P20591 662 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 ADCYAP1R1P41586 468 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 FAM160B2Q86V87 743 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 CHURC1Q8WUH1 139 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 DDX11Q96FC9 970 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 NAPBQ9H115 298 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 FAM184BQ9ULE4 1060 aa16.11■□□□□ 0.17
CHD3-207ENST00000466233 CTDP1Q9Y5B0 961 aaPredicted RBP16.11■□□□□ 0.17
CHD3-207ENST00000466233 RAD21O60216 631 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 ADAMTS4O75173 837 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 DUSP11O75319 330 aaKnown RBP16.1■□□□□ 0.17
CHD3-207ENST00000466233 TSPY3P0CV98 308 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 TSPY8P0CW00 308 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 CST5P28325 142 aaPredicted RBP16.1■□□□□ 0.17
CHD3-207ENST00000466233 NKX3-2P78367 333 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 TKFCQ3LXA3 575 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 ANKRD33Q7Z3H0 272 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 SLC17A8Q8NDX2 589 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 NUP133Q8WUM0 1156 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 FSD1Q9BTV5 496 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 ABHD16BQ9H3Z7 469 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 ANAPC4Q9UJX5 808 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 ATP11BQ9Y2G3 1177 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 SALL3Q9BXA9 1300 aa16.1■□□□□ 0.17
CHD3-207ENST00000466233 SNAI1O95863 264 aaPredicted RBP16.09■□□□□ 0.17
CHD3-207ENST00000466233 FGRP09769 529 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 BMP3P12645 472 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 NOVP48745 357 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 STAT2P52630 851 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 PPARAQ07869 468 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 ALX1Q15699 326 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 TRIM60Q495X7 471 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 TSHZ3Q63HK5 1081 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 SAMD1Q6SPF0 538 aaPredicted RBP16.09■□□□□ 0.17
CHD3-207ENST00000466233 KLHDC9Q8NEP7 349 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 EVI5LQ96CN4 794 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 NUP88Q99567 741 aaPredicted RBP16.09■□□□□ 0.17
CHD3-207ENST00000466233 PDLIM7Q9NR12 457 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 ZBTB47Q9UFB7 747 aaPredicted RBP16.09■□□□□ 0.17
CHD3-207ENST00000466233 RIPK3Q9Y572 518 aa16.09■□□□□ 0.17
CHD3-207ENST00000466233 ZNFX1Q9P2E3 1918 aaKnown RBP16.08■□□□□ 0.16
CHD3-207ENST00000466233 KIAA0355O15063 1070 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 NT5C2P49902 561 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 TFAP4Q01664 338 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 ANO1Q5XXA6 986 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 SLFN13Q68D06 897 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 CCSAPQ6IQ19 270 aaPredicted RBP16.08■□□□□ 0.16
CHD3-207ENST00000466233 RCSD1Q6JBY9 416 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 PCSK9Q8NBP7 692 aaKnown RBP16.08■□□□□ 0.16
CHD3-207ENST00000466233 STAG1Q8WVM7 1258 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.08■□□□□ 0.16
CHD3-207ENST00000466233 ELP1O95163 1332 aa16.08■□□□□ 0.16
CHD3-207ENST00000466233 COL11A1P12107 1806 aaPredicted RBP16.08■□□□□ 0.16
CHD3-207ENST00000466233 A0A1W2PQ45 241 aaPredicted RBP16.07■□□□□ 0.16
CHD3-207ENST00000466233 A0A1W2PQY0 241 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 PRDM1O75626 825 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 CLTBP09497 229 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 TAL1P17542 331 aaPredicted RBP16.07■□□□□ 0.16
CHD3-207ENST00000466233 SMAD3P84022 425 aaKnown RBP16.07■□□□□ 0.16
CHD3-207ENST00000466233 TLE2Q04725 743 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 HDAC1Q13547 482 aaPredicted RBP16.07■□□□□ 0.16
CHD3-207ENST00000466233 ACVR2BQ13705 512 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 ANKRD35Q8N283 1001 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 KIFC2Q96AC6 838 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 SEZ6LQ9BYH1 1024 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 SPC25Q9HBM1 224 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 HELLSQ9NRZ9 838 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 MROH7Q68CQ1 1323 aa16.07■□□□□ 0.16
CHD3-207ENST00000466233 TMEM265A0A087WTH1 108 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 LOC102724159A0A0B4J2E5 919 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 ORC4O43929 436 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 PGK1P00558 417 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 PCP11498 1178 aaKnown RBP16.06■□□□□ 0.16
CHD3-207ENST00000466233 SLC1A4P43007 532 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 ACLYP53396 1101 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 PWP2Q15269 919 aaKnown RBP16.06■□□□□ 0.16
CHD3-207ENST00000466233 CPXCR1Q8N123 301 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 SEC62Q99442 399 aaKnown RBP16.06■□□□□ 0.16
CHD3-207ENST00000466233 UPF3AQ9H1J1 476 aaKnown RBP16.06■□□□□ 0.16
CHD3-207ENST00000466233 ACAD9Q9H845 621 aa16.06■□□□□ 0.16
CHD3-207ENST00000466233 RAVER2Q9HCJ3 691 aaKnown RBP16.06■□□□□ 0.16
CHD3-207ENST00000466233 PNMA2Q9UL42 364 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms