RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 DESI2Q9BSY9 194 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 BARHL2Q9NY43 387 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 POLLQ9UGP5 575 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 MAPK8IP1Q9UQF2 711 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 PHLPP2Q6ZVD8 1323 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 IL1R1P14778 569 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 ATP2B4P23634 1241 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 MTF1Q14872 753 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 ERCC6LQ2NKX8 1250 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 KMT5BQ4FZB7 885 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 MFSD14BQ5SR56 506 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 IGSF22Q8N9C0 903 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 PLIN2Q99541 437 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.12□□□□□ -0.79
SYNE1-217ENST00000466159 FLT1P17948 1338 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 AKR1B15C9JRZ8 316 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-217ENST00000466159 IGSF3O75054 1194 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 RPN1P04843 607 aaKnown RBP10.12□□□□□ -0.79
SYNE1-217ENST00000466159 CCT6AP40227 531 aaKnown RBP10.12□□□□□ -0.79
SYNE1-217ENST00000466159 PBX1P40424 430 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 STAT6P42226 847 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 NT5C2P49902 561 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 RHBDL3P58872 404 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 NAALADL2Q58DX5 795 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 USP17L2Q6R6M4 530 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 DTHD1Q6ZMT9 781 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 C16orf86Q6ZW13 317 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 CCDC148Q8NFR7 591 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 PYM1Q9BRP8 204 aaKnown RBP10.12□□□□□ -0.79
SYNE1-217ENST00000466159 PRDM10Q9NQV6 1147 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 GDAQ9Y2T3 454 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 SNED1Q8TER0 1413 aa10.12□□□□□ -0.79
SYNE1-217ENST00000466159 DDX60LQ5H9U9 1706 aaKnown RBP10.11□□□□□ -0.79
SYNE1-217ENST00000466159 SOWAHDA6NJG2 315 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 URI1O94763 535 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-217ENST00000466159 TXLNAP40222 546 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 ST5P78524 1137 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 ZNF658Q5TYW1 1059 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-217ENST00000466159 FBXO38Q6PIJ6 1188 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 CREBRFQ8IUR6 639 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 DAGLBQ8NCG7 672 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 RBM17Q96I25 401 aaKnown RBP10.11□□□□□ -0.79
SYNE1-217ENST00000466159 CTAGE1Q96RT6 745 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 DISC1Q9NRI5 854 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 ADRA2BP18089 450 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 PRCPP42785 496 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 PAK1Q13153 545 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 KRT31Q15323 416 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 PPFIBP1Q86W92 1011 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 SEPT12Q8IYM1 358 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 ZNF397Q8NF99 534 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-217ENST00000466159 RASSF8Q8NHQ8 419 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 NEDD1Q8NHV4 660 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 TBC1D16Q8TBP0 767 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 NELFBQ8WX92 580 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 CEP95Q96GE4 821 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 WDR24Q96S15 920 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 ZNF287Q9HBT7 754 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 VAT1LQ9HCJ6 419 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 RWDD2AQ9UIY3 292 aa10.11□□□□□ -0.79
SYNE1-217ENST00000466159 C6orf229H3BNL8 230 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 PARP1P09874 1014 aaKnown RBP10.1□□□□□ -0.79
SYNE1-217ENST00000466159 NAPAP54920 295 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 GNG11P61952 73 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 FILIP1LQ4L180 1135 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 GALNT17Q6IS24 598 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 LRRC15Q8TF66 581 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 PANX2Q96RD6 677 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 FEZ1Q99689 392 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 VPS16Q9H269 839 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 PARP3Q9Y6F1 533 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 MYH1P12882 1939 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 UBR3Q6ZT12 1888 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 N4BP3O15049 544 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 CASP14P31944 242 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 UBA7P41226 1012 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 DDR1Q08345 913 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 MEX3CQ5U5Q3 659 aaKnown RBP10.1□□□□□ -0.79
SYNE1-217ENST00000466159 RAD9BQ6WBX8 426 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 LZTS2Q9BRK4 669 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 SPZ1Q9BXG8 430 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 ZMYND12Q9H0C1 365 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 MRPL44Q9H9J2 332 aaKnown RBP10.1□□□□□ -0.79
SYNE1-217ENST00000466159 SPATA31A6Q5VVP1 1343 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 MYH8P13535 1937 aa10.1□□□□□ -0.79
SYNE1-217ENST00000466159 A0A0U1RQJ8 604 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 TRIM49BA6NDI0 452 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 SMCO2A6NFE2 343 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 BBOX1O75936 387 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 GYPCP04921 128 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 FXR1P51114 621 aaKnown RBP eCLIP10.09□□□□□ -0.79
SYNE1-217ENST00000466159 LETM2Q2VYF4 491 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 ATRIPQ8WXE1 791 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 FAM163AQ96GL9 167 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-217ENST00000466159 IRX2Q9BZI1 471 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-217ENST00000466159 UBA5Q9GZZ9 404 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 RMND1Q9NWS8 449 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 TAB2Q9NYJ8 693 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 LIMA1Q9UHB6 759 aaKnown RBP10.09□□□□□ -0.79
SYNE1-217ENST00000466159 GOLGA6L9A6NEM1 432 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms