RNA–Protein interactions for RNA: ENST00000465941.1

HOXA9-203, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-203ENST00000465941 ATP2A1O14983 1001 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 ZBED4O75132 1171 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 PARP1P09874 1014 aaKnown RBP21.5■■□□□ 1.03
HOXA9-203ENST00000465941 CPA1P15085 419 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 CASTP20810 708 aaKnown RBP21.5■■□□□ 1.03
HOXA9-203ENST00000465941 RPS6KB1P23443 525 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 TMEM132BQ14DG7 1078 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 CTU1Q7Z7A3 348 aaKnown RBP21.5■■□□□ 1.03
HOXA9-203ENST00000465941 SGMS1Q86VZ5 419 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 FBXL16Q8N461 479 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 MAP3K14Q99558 947 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 SPATC1LQ9H0A9 340 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 EFCC1Q9HA90 598 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 PRR12Q9ULL5 1215 aa21.5■■□□□ 1.03
HOXA9-203ENST00000465941 CCDC69A6NI79 296 aa21.49■■□□□ 1.03
HOXA9-203ENST00000465941 FMNL1O95466 1100 aaPredicted RBP21.49■■□□□ 1.03
HOXA9-203ENST00000465941 MAPK4P31152 587 aa21.49■■□□□ 1.03
HOXA9-203ENST00000465941 NFXL1Q6ZNB6 911 aa21.49■■□□□ 1.03
HOXA9-203ENST00000465941 RUFY3Q7L099 469 aa21.49■■□□□ 1.03
HOXA9-203ENST00000465941 OTOP1Q7RTM1 612 aa21.49■■□□□ 1.03
HOXA9-203ENST00000465941 TCEANC2Q96MN5 208 aa21.49■■□□□ 1.03
HOXA9-203ENST00000465941 ZNF214Q9UL59 606 aaPredicted RBP21.49■■□□□ 1.03
HOXA9-203ENST00000465941 PALM3A6NDB9 673 aaPredicted RBP21.48■■□□□ 1.03
HOXA9-203ENST00000465941 GOLGA8HP0CJ92 632 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 SLC16A2P36021 539 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 OAZ1P54368 228 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 PKN2Q16513 984 aaKnown RBP21.48■■□□□ 1.03
HOXA9-203ENST00000465941 SYDE2Q5VT97 1194 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 ZNF654Q8IZM8 581 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 MOV10L1Q9BXT6 1211 aaKnown RBP21.48■■□□□ 1.03
HOXA9-203ENST00000465941 PORCNQ9H237 461 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 TRIM17Q9Y577 477 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 CYP46A1Q9Y6A2 500 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 CASP8AP2Q9UKL3 1982 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 PARP14Q460N5 1801 aa21.48■■□□□ 1.03
HOXA9-203ENST00000465941 A0A0G2JMZ2 1700 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 TNPO2O14787 897 aaKnown RBP21.47■■□□□ 1.03
HOXA9-203ENST00000465941 DDAH1O94760 285 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 CALM1P0DP23 149 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 CALM2P0DP24 149 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 CALM3P0DP25 149 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 HOXD10P28358 340 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 STAT3P40763 770 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 PLS1Q14651 629 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 GRM4Q14833 912 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 COL13A1Q5TAT6 717 aaPredicted RBP21.47■■□□□ 1.03
HOXA9-203ENST00000465941 CCAR1Q8IX12 1150 aaKnown RBP21.47■■□□□ 1.03
HOXA9-203ENST00000465941 SHCBP1Q8NEM2 672 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 AGXT2Q9BYV1 514 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 MAD2L2Q9UI95 211 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 CTDP1Q9Y5B0 961 aaPredicted RBP21.47■■□□□ 1.03
HOXA9-203ENST00000465941 SLC12A7Q9Y666 1083 aa21.47■■□□□ 1.03
HOXA9-203ENST00000465941 SLC25A27O95847 323 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 PRMT2P55345 433 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 FGD1P98174 961 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 RIOX2Q8IUF8 465 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 STAG2Q8N3U4 1231 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 COA7Q96BR5 231 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 TEX13BQ9BXU2 312 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 UBA5Q9GZZ9 404 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 MROH8Q9H579 483 aa21.46■■□□□ 1.03
HOXA9-203ENST00000465941 KLRF2D3W0D1 207 aa21.45■■□□□ 1.02
HOXA9-203ENST00000465941 ECM2O94769 699 aaPredicted RBP21.45■■□□□ 1.02
HOXA9-203ENST00000465941 SYNE3Q6ZMZ3 975 aa21.45■■□□□ 1.02
HOXA9-203ENST00000465941 Q6ZUG5 572 aa21.45■■□□□ 1.02
HOXA9-203ENST00000465941 RANBP17Q9H2T7 1088 aaKnown RBP21.45■■□□□ 1.02
HOXA9-203ENST00000465941 SRRDQ9UH36 339 aa21.45■■□□□ 1.02
HOXA9-203ENST00000465941 ERCC3P19447 782 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 COPB2P35606 906 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 APOA5Q6Q788 366 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 GPR142Q7Z601 462 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 PLEKHH3Q7Z736 793 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 CPXCR1Q8N123 301 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 CTCFLQ8NI51 663 aaPredicted RBP21.44■■□□□ 1.02
HOXA9-203ENST00000465941 NUP133Q8WUM0 1156 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 MYL10Q9BUA6 226 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 UPF3BQ9BZI7 483 aaKnown RBP21.44■■□□□ 1.02
HOXA9-203ENST00000465941 RAVER2Q9HCJ3 691 aaKnown RBP21.44■■□□□ 1.02
HOXA9-203ENST00000465941 GJD2Q9UKL4 321 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 BRPF3Q9ULD4 1205 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 PTPN22Q9Y2R2 807 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 ZNF536O15090 1300 aa21.44■■□□□ 1.02
HOXA9-203ENST00000465941 STRNO43815 780 aa21.43■■□□□ 1.02
HOXA9-203ENST00000465941 KIF5BP33176 963 aa21.43■■□□□ 1.02
HOXA9-203ENST00000465941 SNRNP48Q6IEG0 339 aaKnown RBP21.43■■□□□ 1.02
HOXA9-203ENST00000465941 ADGRF4Q8IZF3 695 aa21.43■■□□□ 1.02
HOXA9-203ENST00000465941 FANCBQ8NB91 859 aa21.43■■□□□ 1.02
HOXA9-203ENST00000465941 CPVLQ9H3G5 476 aa21.43■■□□□ 1.02
HOXA9-203ENST00000465941 ICAM1P05362 532 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 RCAN1P53805 252 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 EVCP57679 992 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 SNAP25P60880 206 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 FBXO46Q6PJ61 603 aaPredicted RBP21.42■■□□□ 1.02
HOXA9-203ENST00000465941 NCAPG2Q86XI2 1143 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 BRF1Q92994 677 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 C22orf23Q9BZE7 217 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 PNMA2Q9UL42 364 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 RIPK3Q9Y572 518 aa21.42■■□□□ 1.02
HOXA9-203ENST00000465941 KLF18A0A0U1RQI7 1052 aa21.41■■□□□ 1.02
HOXA9-203ENST00000465941 SLC15A5A6NIM6 579 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms