RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 ZBED4O75132 1171 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 FMNL1O95466 1100 aaPredicted RBP16.03■□□□□ 0.16
LIMD1-203ENST00000465039 CALM1P0DP23 149 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 CALM2P0DP24 149 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 CALM3P0DP25 149 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 CCDC96Q2M329 555 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 COL13A1Q5TAT6 717 aaPredicted RBP16.03■□□□□ 0.16
LIMD1-203ENST00000465039 RIOX2Q8IUF8 465 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 CCAR1Q8IX12 1150 aaKnown RBP16.03■□□□□ 0.16
LIMD1-203ENST00000465039 PAGR1Q9BTK6 254 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 MAF1Q9H063 256 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 BTBD7Q9P203 1132 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 GTF3C3Q9Y5Q9 886 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 SNX14Q9Y5W7 946 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 PARP1P09874 1014 aaKnown RBP16.02■□□□□ 0.16
LIMD1-203ENST00000465039 XRCC5P13010 732 aaKnown RBP16.02■□□□□ 0.16
LIMD1-203ENST00000465039 EXOSC10Q01780 885 aaKnown RBP16.02■□□□□ 0.16
LIMD1-203ENST00000465039 TROAPQ12815 778 aa16.02■□□□□ 0.16
LIMD1-203ENST00000465039 CATIPQ7Z7H3 387 aa16.02■□□□□ 0.16
LIMD1-203ENST00000465039 LY9Q9HBG7 655 aa16.02■□□□□ 0.16
LIMD1-203ENST00000465039 PTPN22Q9Y2R2 807 aa16.02■□□□□ 0.16
LIMD1-203ENST00000465039 COL11A1P12107 1806 aaPredicted RBP16.02■□□□□ 0.16
LIMD1-203ENST00000465039 HTTP42858 3142 aa16.02■□□□□ 0.15
LIMD1-203ENST00000465039 SMARCA1P28370 1054 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 KIF5BP33176 963 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 STAT3P40763 770 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 IKQ13123 557 aaPredicted RBP16.01■□□□□ 0.15
LIMD1-203ENST00000465039 TMEM132BQ14DG7 1078 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 TKFCQ3LXA3 575 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 SYDE2Q5VT97 1194 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 BLOC1S2Q6QNY1 142 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 KCTD1Q719H9 257 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 TRMT44Q8IYL2 757 aaKnown RBP16.01■□□□□ 0.15
LIMD1-203ENST00000465039 PXYLP1Q8TE99 480 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 KIFC2Q96AC6 838 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 MOV10L1Q9BXT6 1211 aaKnown RBP16.01■□□□□ 0.15
LIMD1-203ENST00000465039 ARHGAP39Q9C0H5 1083 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 FBXO40Q9UH90 709 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 PRR12Q9ULL5 1215 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 CTDP1Q9Y5B0 961 aaPredicted RBP16.01■□□□□ 0.15
LIMD1-203ENST00000465039 IVNS1ABPQ9Y6Y0 642 aa16.01■□□□□ 0.15
LIMD1-203ENST00000465039 SLC15A5A6NIM6 579 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 HOXC6P09630 235 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 CTGFP29279 349 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 TRAF1Q13077 416 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 GRM4Q14833 912 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 PPP2R5BQ15173 497 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 Q3C1V9 767 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 ADCK5Q3MIX3 580 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 C8orf34Q49A92 452 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 GPR142Q7Z601 462 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 PLEKHH3Q7Z736 793 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 IL27Q8NEV9 243 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 LZTS2Q9BRK4 669 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 AGXT2Q9BYV1 514 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 MCOLN1Q9GZU1 580 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 PORCNQ9H237 461 aa16■□□□□ 0.15
LIMD1-203ENST00000465039 RANBP17Q9H2T7 1088 aaKnown RBP16■□□□□ 0.15
LIMD1-203ENST00000465039 ISY1Q9ULR0 285 aaKnown RBP16■□□□□ 0.15
LIMD1-203ENST00000465039 ZSWIM8A7E2V4 1837 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 PALM3A6NDB9 673 aaPredicted RBP15.99■□□□□ 0.15
LIMD1-203ENST00000465039 CCDC69A6NI79 296 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 ICAM1P05362 532 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 GNAQP50148 359 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 CAP1Q01518 475 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 GRB14Q14449 540 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 ZNF654Q8IZM8 581 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 TNS4Q8IZW8 715 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 SLAIN1Q8ND83 568 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 CHST13Q8NET6 341 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 JAKMIP1Q96N16 626 aaKnown RBP15.99■□□□□ 0.15
LIMD1-203ENST00000465039 NUDT12Q9BQG2 462 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 ZSWIM6Q9HCJ5 1215 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 GJD2Q9UKL4 321 aa15.99■□□□□ 0.15
LIMD1-203ENST00000465039 ERCC3P19447 782 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 RPS6KB1P23443 525 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 PTPREP23469 700 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 RGS2P41220 211 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 FLT3LGP49771 235 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 PRKCZQ05513 592 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 MORN1Q5T089 497 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 SNRNP48Q6IEG0 339 aaKnown RBP15.98■□□□□ 0.15
LIMD1-203ENST00000465039 DOCK3Q8IZD9 2030 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 CTCFLQ8NI51 663 aaPredicted RBP15.98■□□□□ 0.15
LIMD1-203ENST00000465039 USP6NLQ92738 828 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 ARMC5Q96C12 935 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 APBA2Q99767 749 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 CWC22Q9HCG8 908 aaKnown RBP15.98■□□□□ 0.15
LIMD1-203ENST00000465039 SLC5A4Q9NY91 659 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 SLC12A7Q9Y666 1083 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 PLXNB2O15031 1838 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 NID2Q14112 1375 aa15.98■□□□□ 0.15
LIMD1-203ENST00000465039 KLRF2D3W0D1 207 aa15.97■□□□□ 0.15
LIMD1-203ENST00000465039 FCER1AP12319 257 aa15.97■□□□□ 0.15
LIMD1-203ENST00000465039 EVCP57679 992 aa15.97■□□□□ 0.15
LIMD1-203ENST00000465039 MAP2K5Q13163 448 aa15.97■□□□□ 0.15
LIMD1-203ENST00000465039 PLS1Q14651 629 aa15.97■□□□□ 0.15
LIMD1-203ENST00000465039 SYNE3Q6ZMZ3 975 aa15.97■□□□□ 0.15
LIMD1-203ENST00000465039 NFXL1Q6ZNB6 911 aa15.97■□□□□ 0.15
LIMD1-203ENST00000465039 RUFY3Q7L099 469 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms