RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 ITGB7P26010 798 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 SSRP1Q08945 709 aaKnown RBP6.24□□□□□ -1.41
VPS41-210ENST00000462429 PPP2R5DQ14738 602 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 SPATC1Q76KD6 591 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 TMPRSS7Q7RTY8 843 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 ARHGEF39Q8N4T4 335 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 TCTN2Q96GX1 697 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 DNAJC7Q99615 494 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 CWC22Q9HCG8 908 aaKnown RBP6.24□□□□□ -1.41
VPS41-210ENST00000462429 CGGBP1Q9UFW8 167 aaPredicted RBP6.24□□□□□ -1.41
VPS41-210ENST00000462429 PFDN2Q9UHV9 154 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 DUSP13Q9UII6 198 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 ZMYM5Q9UJ78 669 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 SSU72P8A0A1W2PR75 194 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 ADAM23O75077 832 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 LTKP29376 864 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 GRB10Q13322 594 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 ZNF513Q8N8E2 541 aaPredicted RBP6.23□□□□□ -1.41
VPS41-210ENST00000462429 ZDHHC15Q96MV8 337 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 SPATA9Q9BWV2 254 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 ATP13A1Q9HD20 1204 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 MINPP1Q9UNW1 487 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 SLC5A6Q9Y289 635 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 EMC9Q9Y3B6 208 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 KDM2BQ8NHM5 1336 aa6.23□□□□□ -1.41
VPS41-210ENST00000462429 PRNPP04156 253 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 ITGAVP06756 1048 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 BMP8BP34820 402 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 CD97P48960 835 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 PCBP3P57721 371 aaKnown RBP6.22□□□□□ -1.41
VPS41-210ENST00000462429 POU4F1Q01851 419 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 GAB4Q2WGN9 574 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 RNF111Q6ZNA4 994 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 VSIG10LQ86VR7 867 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 ZNF227Q86WZ6 799 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 DTX1Q86Y01 620 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 CREG2Q8IUH2 290 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 TMA7Q9Y2S6 64 aaKnown RBP6.22□□□□□ -1.41
VPS41-210ENST00000462429 SHROOM4Q9ULL8 1493 aa6.22□□□□□ -1.41
VPS41-210ENST00000462429 A0A1W2PQU0 124 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 KIAA1324LA8MWY0 1029 aaPredicted RBP6.21□□□□□ -1.42
VPS41-210ENST00000462429 H0Y8X5 98 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 KCNH1O95259 989 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 SSTR4P31391 388 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 NOP2P46087 812 aaKnown RBP6.21□□□□□ -1.42
VPS41-210ENST00000462429 AMPD2Q01433 879 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 IKZF1Q13422 519 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 HSP90AA2PQ14568 343 aaPredicted RBP6.21□□□□□ -1.42
VPS41-210ENST00000462429 CRTC3Q6UUV7 619 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 TRIM59Q8IWR1 403 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 LINC00116Q8NCU8 138 aa6.21□□□□□ -1.42
VPS41-210ENST00000462429 THAP3Q8WTV1 239 aaPredicted RBP6.21□□□□□ -1.42
VPS41-210ENST00000462429 BCL7CQ8WUZ0 217 aaPredicted RBP6.21□□□□□ -1.42
VPS41-210ENST00000462429 ANGEL1Q9UNK9 670 aaKnown RBP6.21□□□□□ -1.42
VPS41-210ENST00000462429 WASH4PA8MWX3 477 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 DIAPH1O60610 1272 aaKnown RBP6.2□□□□□ -1.42
VPS41-210ENST00000462429 MED26O95402 600 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 SYPP08247 313 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 SPINK2P20155 84 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 ENDOUP21128 410 aaKnown RBP6.2□□□□□ -1.42
VPS41-210ENST00000462429 CTSKP43235 329 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 PPP2R2AP63151 447 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 EGR3Q06889 387 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 BNIP3Q12983 259 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 LONRF2Q1L5Z9 754 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 ZC3H12BQ5HYM0 836 aaKnown RBP6.2□□□□□ -1.42
VPS41-210ENST00000462429 ANGEL2Q5VTE6 544 aaKnown RBP6.2□□□□□ -1.42
VPS41-210ENST00000462429 GIMAP6Q6P9H5 292 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 LILRB2Q8N423 598 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 USHBP1Q8N6Y0 703 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 SYTL4Q96C24 671 aaPredicted RBP6.2□□□□□ -1.42
VPS41-210ENST00000462429 MRGPRX3Q96LB0 322 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 AARSD1Q9BTE6 412 aaKnown RBP6.2□□□□□ -1.42
VPS41-210ENST00000462429 LMCD1Q9NZU5 365 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 CCDC39Q9UFE4 941 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 TCFL5Q9UL49 500 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 PCDHA11Q9Y5I1 949 aa6.2□□□□□ -1.42
VPS41-210ENST00000462429 TRAV20A0A0B4J274 112 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 TLDC2A0PJX2 215 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 ESR1P03372 595 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 CD3EP07766 207 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 VAV1P15498 845 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 C2orf27AQ580R0 203 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 ZMYM1Q5SVZ6 1142 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 GTF2IRD2BQ6EKJ0 949 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 GTF2IRD2Q86UP8 949 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 ZBTB38Q8NAP3 1195 aaPredicted RBP6.19□□□□□ -1.42
VPS41-210ENST00000462429 FLCNQ8NFG4 579 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 BTN2A2Q8WVV5 523 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 IPO9Q96P70 1041 aaKnown RBP6.19□□□□□ -1.42
VPS41-210ENST00000462429 LGR4Q9BXB1 951 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 FOXP3Q9BZS1 431 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 PCMTD2Q9NV79 361 aa6.19□□□□□ -1.42
VPS41-210ENST00000462429 VAMP4O75379 141 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 ZNF205O95201 554 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 CD8BP10966 210 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 DPY19L1Q2PZI1 675 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 JAZF1Q86VZ6 243 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 JMYQ8N9B5 988 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 ZSWIM2Q8NEG5 633 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms