RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 INO80BQ9C086 356 aaPredicted RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 BRINP2Q9C0B6 783 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 WNT10AQ9GZT5 417 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 ATP13A1Q9HD20 1204 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 MAP3K20Q9NYL2 800 aaKnown RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 TTF2Q9UNY4 1162 aaKnown RBP6.63□□□□□ -1.35
VPS41-209ENST00000457055 MAP3K4Q9Y6R4 1608 aa6.63□□□□□ -1.35
VPS41-209ENST00000457055 H3BS24 57 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 CBFA2T2O43439 604 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 ZNF865P0CJ78 1059 aaPredicted RBP6.62□□□□□ -1.35
VPS41-209ENST00000457055 VAMP1P23763 118 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 MAN1A1P33908 653 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 ETF1P62495 437 aaKnown RBP6.62□□□□□ -1.35
VPS41-209ENST00000457055 NKG7Q16617 165 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 WIPI1Q5MNZ9 446 aaPredicted RBP6.62□□□□□ -1.35
VPS41-209ENST00000457055 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.62□□□□□ -1.35
VPS41-209ENST00000457055 SPOCD1Q6ZMY3 1216 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 C22orf34Q6ZV56 151 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 MFSD2AQ8NA29 543 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 MYCBPQ99417 103 aaPredicted RBP6.62□□□□□ -1.35
VPS41-209ENST00000457055 SPC25Q9HBM1 224 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 SEMA3GQ9NS98 782 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 RAI14Q9P0K7 980 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 MRVI1Q9Y6F6 885 aa6.62□□□□□ -1.35
VPS41-209ENST00000457055 CNTNAP4Q9C0A0 1308 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.61□□□□□ -1.35
VPS41-209ENST00000457055 GLI1P08151 1106 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 HDLBPQ00341 1268 aaKnown RBP6.61□□□□□ -1.35
VPS41-209ENST00000457055 MAP2K1Q02750 393 aaPredicted RBP6.61□□□□□ -1.35
VPS41-209ENST00000457055 NEXNQ0ZGT2 675 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 GJC2Q5T442 439 aaPredicted RBP6.61□□□□□ -1.35
VPS41-209ENST00000457055 TTBK2Q6IQ55 1244 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 MPZL3Q6UWV2 235 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 SV2BQ7L1I2 683 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 BHLHE22Q8NFJ8 381 aaPredicted RBP6.61□□□□□ -1.35
VPS41-209ENST00000457055 KIRREL1Q96J84 757 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 TCEAL9Q9UHQ7 104 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 G3BP2Q9UN86 482 aaKnown RBP6.61□□□□□ -1.35
VPS41-209ENST00000457055 CTDP1Q9Y5B0 961 aaPredicted RBP6.61□□□□□ -1.35
VPS41-209ENST00000457055 SNCAIPQ9Y6H5 919 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 SCINQ9Y6U3 715 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 MADDQ8WXG6 1647 aa6.61□□□□□ -1.35
VPS41-209ENST00000457055 ERCC5P28715 1186 aaPredicted RBP6.6□□□□□ -1.35
VPS41-209ENST00000457055 CAP2P40123 477 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 PEX19P40855 299 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 TBX4P57082 545 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 PLEKHG6Q3KR16 790 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 L1TD1Q5T7N2 865 aaKnown RBP6.6□□□□□ -1.35
VPS41-209ENST00000457055 RNF187Q5TA31 235 aaPredicted RBP6.6□□□□□ -1.35
VPS41-209ENST00000457055 ZNF746Q6NUN9 644 aaPredicted RBP6.6□□□□□ -1.35
VPS41-209ENST00000457055 LETMD1Q6P1Q0 360 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 CCDC174Q6PII3 467 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 NPAS4Q8IUM7 802 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 HID1Q8IV36 788 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 TANGO6Q9C0B7 1094 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 RBM28Q9NW13 759 aaKnown RBP6.6□□□□□ -1.35
VPS41-209ENST00000457055 CAPN6Q9Y6Q1 641 aa6.6□□□□□ -1.35
VPS41-209ENST00000457055 RIMS1Q86UR5 1692 aaKnown RBP6.6□□□□□ -1.35
VPS41-209ENST00000457055 STRCQ7RTU9 1775 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 CBX7O95931 251 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 LDHBP07195 334 aaKnown RBP6.59□□□□□ -1.35
VPS41-209ENST00000457055 P4HBP07237 508 aaKnown RBP6.59□□□□□ -1.35
VPS41-209ENST00000457055 CD53P19397 219 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 LMNB1P20700 586 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 TNNT2P45379 298 aaPredicted RBP6.59□□□□□ -1.35
VPS41-209ENST00000457055 CDK8P49336 464 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 EVA1CP58658 441 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 CCDC144BQ3MJ40 725 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 FBLN7Q53RD9 439 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 TMEM67Q5HYA8 995 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 PRAMEF13Q5VWM6 474 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 LSM14AQ8ND56 463 aaKnown RBP6.59□□□□□ -1.35
VPS41-209ENST00000457055 RIN3Q8TB24 985 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 XAGE3Q8WTP9 111 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 PPP1R16BQ96T49 567 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 CDC5LQ99459 802 aaKnown RBP6.59□□□□□ -1.35
VPS41-209ENST00000457055 C19orf73Q9NVV2 129 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 TBX22Q9Y458 520 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 ST14Q9Y5Y6 855 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 ABCA10Q8WWZ4 1543 aa6.59□□□□□ -1.35
VPS41-209ENST00000457055 SYNRGQ9UMZ2 1314 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 PRC1O43663 620 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 S100BP04271 92 aaPredicted RBP6.58□□□□□ -1.36
VPS41-209ENST00000457055 GRK4P32298 578 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 GDNFP39905 211 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 RAP1GAPP47736 663 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 PSMC1P62191 440 aaKnown RBP6.58□□□□□ -1.36
VPS41-209ENST00000457055 SAFB2Q14151 953 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS41-209ENST00000457055 PRR23BQ6ZRT6 265 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 THAP5Q7Z6K1 395 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 DRC7Q8IY82 874 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 FRMD6Q96NE9 622 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 TMEM51Q9NW97 253 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 SFMBT1Q9UHJ3 866 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 PUF60Q9UHX1 559 aaKnown RBP6.58□□□□□ -1.36
VPS41-209ENST00000457055 COL4A3BPQ9Y5P4 624 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 EPRSP07814 1512 aaKnown RBP6.58□□□□□ -1.36
VPS41-209ENST00000457055 ABCC2Q92887 1545 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 BCORL1Q5H9F3 1711 aa6.58□□□□□ -1.36
VPS41-209ENST00000457055 FHAD1B1AJZ9 1412 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms