RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 LMBRD2Q68DH5 695 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 PRPF40BQ6NWY9 871 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 XKR5Q6UX68 686 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SYNE3Q6ZMZ3 975 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 NFXL1Q6ZNB6 911 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 ZNF771Q7L3S4 317 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 CCDC91Q7Z6B0 441 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 KIAA0907Q7Z7F0 614 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 ARL10Q8N8L6 244 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 USP32Q8NFA0 1604 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 FBXO27Q8NI29 283 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 TSR2Q969E8 191 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SYAP1Q96A49 352 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 ERP27Q96DN0 273 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 RHOVQ96L33 236 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 NLRP3Q96P20 1036 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 ABCA3Q99758 1704 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SRRTQ9BXP5 876 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 TRIM6Q9C030 488 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 EHD4Q9H223 541 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SUV39H2Q9H5I1 410 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 PFDN2Q9UHV9 154 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 HDAC9Q9UKV0 1011 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 ASAP1Q9ULH1 1129 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 PPLO60437 1756 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 C1orf167Q5SNV9 1468 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 NRXN1Q9ULB1 1477 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 FSD2A1L4K1 749 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 F8VZ95 297 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 CHL1O00533 1208 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 VAMP4O75379 141 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 OFD1O75665 1012 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 MYCLP1P12525 358 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 GARTP22102 1010 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 TOMM20Q15388 145 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 NFKBIBQ15653 356 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SEZ6Q53EL9 994 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 C1orf53Q5VUE5 145 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 PEAR1Q5VY43 1037 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 PDE12Q6L8Q7 609 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SAPCD2Q86UD0 394 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 FERMT3Q86UX7 667 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 MYLK4Q86YV6 388 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 GALNT12Q8IXK2 581 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 GABPB2Q8TAK5 448 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 MAP3K14Q99558 947 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 NT5C1AQ9BXI3 368 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 TNKS2Q9H2K2 1166 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 KMT5AQ9NQR1 393 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 AVENQ9NQS1 362 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 DCAF16Q9NXF7 216 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 PRKAB1Q9Y478 270 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 IFT172Q9UG01 1749 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CHD4Q14839 1912 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 PRSS47A8MTI9 375 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 KRT38O76015 456 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CDKL5O76039 1030 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CCDC159P0C7I6 412 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 HSPA5P11021 654 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 IMPDH2P12268 514 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 RPL17P18621 184 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CDKN1CP49918 316 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 ADCY2Q08462 1091 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 DDR2Q16832 855 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 C4orf17Q53FE4 359 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 IFFO2Q5TF58 517 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CCBE1Q6UXH8 406 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 PAF1Q8N7H5 531 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 ZFPM2Q8WW38 1151 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 IWS1Q96ST2 819 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 XPO4Q9C0E2 1151 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 UNC45AQ9H3U1 944 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CHST12Q9NRB3 414 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 PGPEP1Q9NXJ5 209 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 MSRB2Q9Y3D2 182 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 ADGRB2O60241 1585 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 ADGRF5Q8IZF2 1346 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 GREM1O60565 184 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 BAG6P46379 1132 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 IRX1P78414 480 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CBX1P83916 185 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 NR5A1Q13285 461 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CAMK2GQ13555 558 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 TBC1D25Q3MII6 688 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 FILIP1LQ4L180 1135 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 HOMER1Q86YM7 354 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 TRPM4Q8TD43 1214 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 RHBDD1Q8TEB9 315 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 ITPKCQ96DU7 683 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 TRIM11Q96F44 468 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 DHRS1Q96LJ7 313 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 FEZ1Q99689 392 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 OXCT2Q9BYC2 517 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 SLC7A5P2Q9GIP4 190 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 CLIC5Q9NZA1 410 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 MAPK8IP1Q9UQF2 711 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 RREB1Q92766 1687 aa5.54□□□□□ -1.52
CCDC88A-209ENST00000456975 NUP188Q5SRE5 1749 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 SENP3-EIF4A1A0A087X0R7 540 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms