RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 MFAP1P55081 439 aaKnown RBP14.27□□□□□ -0.13
USP40-210ENST00000454354 SLFN13Q68D06 897 aa14.27□□□□□ -0.13
USP40-210ENST00000454354 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP40-210ENST00000454354 MAML3Q96JK9 1138 aa14.27□□□□□ -0.13
USP40-210ENST00000454354 NBPF3Q9H094 633 aa14.27□□□□□ -0.13
USP40-210ENST00000454354 SLC38A10Q9HBR0 1119 aa14.27□□□□□ -0.13
USP40-210ENST00000454354 INCENPQ9NQS7 918 aa14.27□□□□□ -0.13
USP40-210ENST00000454354 IL17RBQ9NRM6 502 aa14.27□□□□□ -0.13
USP40-210ENST00000454354 FEM1BQ9UK73 627 aa14.27□□□□□ -0.13
USP40-210ENST00000454354 HIP1O00291 1037 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 COL6A1P12109 1028 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 BMP3P12645 472 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 CYP2C19P33261 490 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 SNRNP48Q6IEG0 339 aaKnown RBP14.26□□□□□ -0.13
USP40-210ENST00000454354 TRPV1Q8NER1 839 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 MMP19Q99542 508 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 STX8Q9UNK0 236 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 DIS3Q9Y2L1 958 aaKnown RBP14.26□□□□□ -0.13
USP40-210ENST00000454354 LRRC37A2A6NM11 1700 aa14.26□□□□□ -0.13
USP40-210ENST00000454354 MYH6P13533 1939 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 PFASO15067 1338 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 RANBP6O60518 1105 aaKnown RBP14.25□□□□□ -0.13
USP40-210ENST00000454354 NMT2O60551 498 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 PLA2G6O60733 806 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 FDX1P10109 184 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 PCP11498 1178 aaKnown RBP14.25□□□□□ -0.13
USP40-210ENST00000454354 PDE4AP27815 886 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 OAZ1P54368 228 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 KCTD2Q14681 263 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 C11orf49Q9H6J7 331 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 DIAPH3Q9NSV4 1193 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 TCP11L1Q9NUJ3 509 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 DDX20Q9UHI6 824 aaKnown RBP14.25□□□□□ -0.13
USP40-210ENST00000454354 NR2E3Q9Y5X4 410 aa14.25□□□□□ -0.13
USP40-210ENST00000454354 ZBED4O75132 1171 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 NT5C2P49902 561 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 STAT2P52630 851 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 IRX6P78412 446 aaPredicted RBP14.24□□□□□ -0.13
USP40-210ENST00000454354 ZNF792Q3KQV3 632 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 HABP4Q5JVS0 413 aaKnown RBP14.24□□□□□ -0.13
USP40-210ENST00000454354 AKNAD1Q5T1N1 836 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 CWC27Q6UX04 472 aaKnown RBP14.24□□□□□ -0.13
USP40-210ENST00000454354 FAM160B2Q86V87 743 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 STAG1Q8WVM7 1258 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 KIFC2Q96AC6 838 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 NRBP1Q9UHY1 535 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 RIPK3Q9Y572 518 aa14.24□□□□□ -0.13
USP40-210ENST00000454354 TMEM232C9JQI7 657 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 SEPT4O43236 478 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 EVI5O60447 810 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 PGK2P07205 417 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 GSPT1P15170 499 aaKnown RBP14.23□□□□□ -0.13
USP40-210ENST00000454354 SLC1A4P43007 532 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 HAND2P61296 217 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 TTC22Q5TAA0 569 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 TBC1D10CQ8IV04 446 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 CHURC1Q8WUH1 139 aa14.23□□□□□ -0.13
USP40-210ENST00000454354 COLQQ9Y215 455 aaPredicted RBP14.23□□□□□ -0.13
USP40-210ENST00000454354 LTBP2Q14767 1821 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 DNAJC25-GNG10A0A024R161 153 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 MCCP23508 829 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 CNGA1P29973 690 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 RCSD1Q6JBY9 416 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 MFSD6Q6ZSS7 791 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 RASGRP2Q7LDG7 609 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 CPXCR1Q8N123 301 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 MSL3Q8N5Y2 521 aaKnown RBP14.22□□□□□ -0.13
USP40-210ENST00000454354 CHST13Q8NET6 341 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 DCAF4Q8WV16 495 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 TINF2Q9BSI4 451 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 DSCC1Q9BVC3 393 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 PRO3102Q9H379 93 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 RNF41Q9H4P4 317 aaPredicted RBP14.22□□□□□ -0.13
USP40-210ENST00000454354 RAVER2Q9HCJ3 691 aaKnown RBP14.22□□□□□ -0.13
USP40-210ENST00000454354 TOMM22Q9NS69 142 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 FBXO40Q9UH90 709 aa14.22□□□□□ -0.13
USP40-210ENST00000454354 CTDP1Q9Y5B0 961 aaPredicted RBP14.22□□□□□ -0.13
USP40-210ENST00000454354 ZNF536O15090 1300 aa14.21□□□□□ -0.13
USP40-210ENST00000454354 NEDD4P46934 1319 aa14.21□□□□□ -0.13
USP40-210ENST00000454354 RAD50Q92878 1312 aa14.21□□□□□ -0.13
USP40-210ENST00000454354 TOP1P11387 765 aaKnown RBP14.21□□□□□ -0.13
USP40-210ENST00000454354 RRP12Q5JTH9 1297 aaKnown RBP14.21□□□□□ -0.13
USP40-210ENST00000454354 KCTD1Q719H9 257 aa14.21□□□□□ -0.13
USP40-210ENST00000454354 TTC14Q96N46 770 aa14.21□□□□□ -0.13
USP40-210ENST00000454354 TMEM47Q9BQJ4 181 aa14.21□□□□□ -0.13
USP40-210ENST00000454354 SYNGAP1Q96PV0 1343 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 SZT2Q5T011 3432 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 DNM1LO00429 736 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 ZNF213O14771 459 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 MAMDC4Q6UXC1 1216 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 BTNL9Q6UXG8 535 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 CHRDL2Q6WN34 429 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 ZNF467Q7Z7K2 595 aaPredicted RBP14.2□□□□□ -0.14
USP40-210ENST00000454354 IL25Q9H293 177 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 PRR12Q9ULL5 1215 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 LAMA3Q16787 3333 aa14.2□□□□□ -0.14
USP40-210ENST00000454354 ZNF865P0CJ78 1059 aaPredicted RBP14.19□□□□□ -0.14
USP40-210ENST00000454354 IKQ13123 557 aaPredicted RBP14.19□□□□□ -0.14
USP40-210ENST00000454354 TKFCQ3LXA3 575 aa14.19□□□□□ -0.14
USP40-210ENST00000454354 PRAMEF19Q5SWL8 479 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms