RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 FEM1BQ9UK73 627 aa23.44■■□□□ 1.34
COL9A3-202ENST00000452372 A0A0G2JMZ2 1700 aa23.44■■□□□ 1.34
COL9A3-202ENST00000452372 HMGCRP04035 888 aa23.43■■□□□ 1.34
COL9A3-202ENST00000452372 MAPK4P31152 587 aa23.43■■□□□ 1.34
COL9A3-202ENST00000452372 SAMD1Q6SPF0 538 aaPredicted RBP23.43■■□□□ 1.34
COL9A3-202ENST00000452372 CYB5R4Q7L1T6 521 aa23.43■■□□□ 1.34
COL9A3-202ENST00000452372 RALYLQ86SE5 291 aaKnown RBP23.43■■□□□ 1.34
COL9A3-202ENST00000452372 TRIB2Q92519 343 aa23.43■■□□□ 1.34
COL9A3-202ENST00000452372 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.43■■□□□ 1.342e-9■■□□□ 14.1
COL9A3-202ENST00000452372 PCDH10Q9P2E7 1040 aa23.43■■□□□ 1.34
COL9A3-202ENST00000452372 TNKSO95271 1327 aa23.42■■□□□ 1.34
COL9A3-202ENST00000452372 VWA5AO00534 786 aa23.42■■□□□ 1.34
COL9A3-202ENST00000452372 CYP2B6P20813 491 aa23.42■■□□□ 1.34
COL9A3-202ENST00000452372 RNF20Q5VTR2 975 aa23.42■■□□□ 1.34
COL9A3-202ENST00000452372 ENAHQ8N8S7 591 aaPredicted RBP23.42■■□□□ 1.34
COL9A3-202ENST00000452372 DCAF4Q8WV16 495 aa23.42■■□□□ 1.34
COL9A3-202ENST00000452372 UBAC1Q9BSL1 405 aa23.42■■□□□ 1.34
COL9A3-202ENST00000452372 SPATC1LQ9H0A9 340 aa23.42■■□□□ 1.34
COL9A3-202ENST00000452372 TMEM232C9JQI7 657 aa23.41■■□□□ 1.34
COL9A3-202ENST00000452372 PLA2G6O60733 806 aa23.41■■□□□ 1.34
COL9A3-202ENST00000452372 XRCC5P13010 732 aaKnown RBP23.41■■□□□ 1.34
COL9A3-202ENST00000452372 CAPN2P17655 700 aa23.41■■□□□ 1.34
COL9A3-202ENST00000452372 FXR1P51114 621 aaKnown RBP eCLIP23.41■■□□□ 1.34
COL9A3-202ENST00000452372 MORN1Q5T089 497 aa23.41■■□□□ 1.34
COL9A3-202ENST00000452372 MAP3K21Q5TCX8 1036 aa23.41■■□□□ 1.34
COL9A3-202ENST00000452372 CCAR1Q8IX12 1150 aaKnown RBP23.41■■□□□ 1.34
COL9A3-202ENST00000452372 CHURC1Q8WUH1 139 aa23.41■■□□□ 1.34
COL9A3-202ENST00000452372 COL11A1P12107 1806 aaPredicted RBP23.4■■□□□ 1.34
COL9A3-202ENST00000452372 RPTORQ8N122 1335 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 MNX1P50219 401 aaPredicted RBP23.4■■□□□ 1.34
COL9A3-202ENST00000452372 STAT2P52630 851 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 TMEM132BQ14DG7 1078 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 KCTD1Q719H9 257 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 GPR142Q7Z601 462 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 FAM160B2Q86V87 743 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 REPS2Q8NFH8 660 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 KIFC2Q96AC6 838 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 CHMP4CQ96CF2 233 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 NUDT12Q9BQG2 462 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 HTATIP2Q9BUP3 242 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 MOV10L1Q9BXT6 1211 aaKnown RBP23.4■■□□□ 1.34
COL9A3-202ENST00000452372 KAT14Q9H8E8 782 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 MTMR7Q9Y216 660 aa23.4■■□□□ 1.34
COL9A3-202ENST00000452372 REC8O95072 547 aa23.39■■□□□ 1.33
COL9A3-202ENST00000452372 SEC23AQ15436 765 aa23.39■■□□□ 1.33
COL9A3-202ENST00000452372 RASGRP2Q7LDG7 609 aa23.39■■□□□ 1.33
COL9A3-202ENST00000452372 MB21D2Q8IYB1 491 aaPredicted RBP23.39■■□□□ 1.33
COL9A3-202ENST00000452372 SHCBP1Q8NEM2 672 aa23.39■■□□□ 1.33
COL9A3-202ENST00000452372 DIS3LQ8TF46 1054 aaKnown RBP23.39■■□□□ 1.33
COL9A3-202ENST00000452372 ISY1Q9ULR0 285 aaKnown RBP23.39■■□□□ 1.33
COL9A3-202ENST00000452372 ALPK3Q96L96 1907 aa23.39■■□□□ 1.33
COL9A3-202ENST00000452372 SZT2Q5T011 3432 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 ZBED4O75132 1171 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 SNHG28P0DPA3 235 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 FDX1P10109 184 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 PDHBP11177 359 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 PLS1Q14651 629 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 CCDC96Q2M329 555 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 TSGA10IPQ3SY00 556 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 IFIT1BQ5T764 474 aaKnown RBP23.38■■□□□ 1.33
COL9A3-202ENST00000452372 PLEKHH3Q7Z736 793 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 PNMA1Q8ND90 353 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 PAWRQ96IZ0 340 aaKnown RBP23.38■■□□□ 1.33
COL9A3-202ENST00000452372 PRO3102Q9H379 93 aa23.38■■□□□ 1.33
COL9A3-202ENST00000452372 HMX1Q9NP08 348 aaPredicted RBP23.38■■□□□ 1.33
COL9A3-202ENST00000452372 ZNF214Q9UL59 606 aaPredicted RBP23.38■■□□□ 1.33
COL9A3-202ENST00000452372 IFIT3O14879 490 aaKnown RBP23.37■■□□□ 1.33
COL9A3-202ENST00000452372 EPB41L2O43491 1005 aaKnown RBP23.37■■□□□ 1.33
COL9A3-202ENST00000452372 STAT3P40763 770 aa23.37■■□□□ 1.33
COL9A3-202ENST00000452372 CCL14Q16627 93 aa23.37■■□□□ 1.33
COL9A3-202ENST00000452372 SOCS4Q8WXH5 440 aa23.37■■□□□ 1.33
COL9A3-202ENST00000452372 SLC38A10Q9HBR0 1119 aa23.37■■□□□ 1.33
COL9A3-202ENST00000452372 CWC22Q9HCG8 908 aaKnown RBP23.37■■□□□ 1.33
COL9A3-202ENST00000452372 ERICH2A1L162 156 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 ATP2A1O14983 1001 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 SLC25A27O95847 323 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 ANTXR2P58335 489 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 IKQ13123 557 aaPredicted RBP23.36■■□□□ 1.33
COL9A3-202ENST00000452372 SART3Q15020 963 aaKnown RBP23.36■■□□□ 1.33
COL9A3-202ENST00000452372 BTNL9Q6UXG8 535 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 CHRDL2Q6WN34 429 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 CHST3Q7LGC8 479 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 RIOX2Q8IUF8 465 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 MTA3Q9BTC8 594 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 MROH8Q9H579 483 aa23.36■■□□□ 1.33
COL9A3-202ENST00000452372 ZKSCAN1P17029 563 aaPredicted RBP23.35■■□□□ 1.33
COL9A3-202ENST00000452372 ERCC3P19447 782 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 PTPREP23469 700 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 MCM5P33992 734 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 CACNB2Q08289 660 aaPredicted RBP23.35■■□□□ 1.33
COL9A3-202ENST00000452372 ZNF543Q08ER8 600 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 WDR78Q5VTH9 848 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 TTBK2Q6IQ55 1244 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 RASEFQ8IZ41 740 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 IGDCC4Q8TDY8 1250 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 KCNB2Q92953 911 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 GPCPD1Q9NPB8 672 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 RBM27Q9P2N5 1060 aaKnown RBP23.35■■□□□ 1.33
COL9A3-202ENST00000452372 OGDHLQ9ULD0 1010 aa23.35■■□□□ 1.33
COL9A3-202ENST00000452372 PRR12Q9ULL5 1215 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms