RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CCDC73Q6ZRK6 1079 aa16.35■□□□□ 0.21
USP39-207ENST00000450066 ILDR2Q71H61 639 aa16.35■□□□□ 0.21
USP39-207ENST00000450066 MRPS27Q92552 414 aaKnown RBP16.35■□□□□ 0.21
USP39-207ENST00000450066 DEFB129Q9H1M3 183 aa16.35■□□□□ 0.21
USP39-207ENST00000450066 GOLPH3LQ9H4A5 285 aa16.35■□□□□ 0.21
USP39-207ENST00000450066 ARHGEF10LQ9HCE6 1279 aa16.35■□□□□ 0.21
USP39-207ENST00000450066 PCDHB6Q9Y5E3 794 aa16.35■□□□□ 0.21
USP39-207ENST00000450066 MORC2Q9Y6X9 1032 aaPredicted RBP16.35■□□□□ 0.21
USP39-207ENST00000450066 ASTN2O75129 1339 aaPredicted RBP16.35■□□□□ 0.21
USP39-207ENST00000450066 PNMA6FA0A0J9YX94 578 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 FAM205CA6NFA0 338 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 TRIM75PA6NK02 468 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 M0R2N6 131 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 MARCKSP29966 332 aaPredicted RBP16.34■□□□□ 0.21
USP39-207ENST00000450066 MRE11P49959 708 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 NAPAP54920 295 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 FAM160A1Q05DH4 1040 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 FSIP1Q8NA03 581 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 MTMR8Q96EF0 704 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 NUP62CLQ9H1M0 184 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 A0A1W2PRG0 241 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 RAD21O60216 631 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 NDUFB10O96000 172 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 YBX3P16989 372 aaKnown RBP eCLIP16.34■□□□□ 0.216e-7■■□□□ 12.2
USP39-207ENST00000450066 CMA1P23946 247 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 GNA11P29992 359 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 SNW1Q13573 536 aaKnown RBP16.34■□□□□ 0.21
USP39-207ENST00000450066 ENGASEQ8NFI3 743 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 CLSTN2Q9H4D0 955 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 C6orf50Q9HD87 102 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 SCAF8Q9UPN6 1271 aaKnown RBP16.34■□□□□ 0.21
USP39-207ENST00000450066 TMX2Q9Y320 296 aa16.34■□□□□ 0.21
USP39-207ENST00000450066 ESYT2A0FGR8 921 aa16.33■□□□□ 0.21
USP39-207ENST00000450066 PHF20L1A8MW92 1017 aa16.33■□□□□ 0.21
USP39-207ENST00000450066 ADAMTS3O15072 1205 aa16.33■□□□□ 0.21
USP39-207ENST00000450066 ASNSP08243 561 aa16.33■□□□□ 0.21
USP39-207ENST00000450066 PIK3AP1Q6ZUJ8 805 aa16.33■□□□□ 0.21
USP39-207ENST00000450066 APOBEC3FQ8IUX4 373 aaKnown RBP16.33■□□□□ 0.21
USP39-207ENST00000450066 GRPEL1Q9HAV7 217 aa16.33■□□□□ 0.21
USP39-207ENST00000450066 ZBTB5O15062 677 aa16.33■□□□□ 0.2
USP39-207ENST00000450066 CUTAO60888 179 aa16.33■□□□□ 0.2
USP39-207ENST00000450066 BMP15O95972 392 aa16.33■□□□□ 0.2
USP39-207ENST00000450066 SLC16A2P36021 539 aa16.33■□□□□ 0.2
USP39-207ENST00000450066 NOM1Q5C9Z4 860 aaKnown RBP16.33■□□□□ 0.2
USP39-207ENST00000450066 KRI1Q8N9T8 703 aaKnown RBP16.33■□□□□ 0.2
USP39-207ENST00000450066 RNF181Q9P0P0 153 aa16.33■□□□□ 0.2
USP39-207ENST00000450066 PCDHA6Q9UN73 950 aa16.33■□□□□ 0.2
USP39-207ENST00000450066 PCDHA8Q9Y5H6 950 aa16.33■□□□□ 0.2
USP39-207ENST00000450066 SMCO2A6NFE2 343 aa16.32■□□□□ 0.2
USP39-207ENST00000450066 USP17L10C9JJH3 530 aa16.32■□□□□ 0.2
USP39-207ENST00000450066 ATP2B1P20020 1258 aa16.32■□□□□ 0.2
USP39-207ENST00000450066 PPP1R18Q6NYC8 613 aa16.32■□□□□ 0.2
USP39-207ENST00000450066 FMR1NBQ8N0W7 255 aaPredicted RBP16.32■□□□□ 0.2
USP39-207ENST00000450066 TRPM4Q8TD43 1214 aa16.32■□□□□ 0.2
USP39-207ENST00000450066 TNMDQ9H2S6 317 aa16.32■□□□□ 0.2
USP39-207ENST00000450066 A0A1B0GVL5 298 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 BMP3P12645 472 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 EPS15P42566 896 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 ECE1P42892 770 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 MAP3K11Q16584 847 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 TTC38Q5R3I4 469 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 ANGEL2Q5VTE6 544 aaKnown RBP16.31■□□□□ 0.2
USP39-207ENST00000450066 RBM43Q6ZSC3 357 aaKnown RBP16.31■□□□□ 0.2
USP39-207ENST00000450066 ACER1Q8TDN7 264 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 TSPY26PQ9H489 355 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 SH2D4AQ9H788 454 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 GOPCQ9HD26 462 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 GINM1Q9NU53 330 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 CCDC194A0A1B0GVG4 234 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 KINO60870 393 aaKnown RBP16.31■□□□□ 0.2
USP39-207ENST00000450066 PTPREP23469 700 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 NDUFA8P51970 172 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 CAMK4Q16566 473 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 HOOK2Q96ED9 719 aa16.31■□□□□ 0.2
USP39-207ENST00000450066 FBXO2Q9UK22 296 aaPredicted RBP16.31■□□□□ 0.2
USP39-207ENST00000450066 FAM237AA0A1B0GTK4 181 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 RESP18Q5W5W9 173 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 SHC4Q6S5L8 630 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 BTNL9Q6UXG8 535 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 ZNF579Q8NAF0 562 aaKnown RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 SRPRBQ9Y5M8 271 aaKnown RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 CTAGE5O15320 804 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 CTNND1O60716 968 aaKnown RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 PPP1R11O60927 126 aaPredicted RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 DDNO94850 711 aaPredicted RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 XRCC6P12956 609 aaKnown RBP eCLIP16.3■□□□□ 0.2
USP39-207ENST00000450066 HIRAP54198 1017 aaPredicted RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 NBPF12Q5TAG4 269 aaPredicted RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 DCAF15Q66K64 600 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 KRT25Q7Z3Z0 450 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 RASGRP4Q8TDF6 673 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 COA7Q96BR5 231 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 CLIC6Q96NY7 704 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 NUP88Q99567 741 aaPredicted RBP16.3■□□□□ 0.2
USP39-207ENST00000450066 PPP2R3BQ9Y5P8 575 aa16.3■□□□□ 0.2
USP39-207ENST00000450066 TMEM232C9JQI7 657 aa16.29■□□□□ 0.2
USP39-207ENST00000450066 WNT7AO00755 349 aa16.29■□□□□ 0.2
USP39-207ENST00000450066 PFKFB1P16118 471 aa16.29■□□□□ 0.2
USP39-207ENST00000450066 C9orf131Q5VYM1 1079 aa16.29■□□□□ 0.2
USP39-207ENST00000450066 REXO1Q8N1G1 1221 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms