RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 NR5A1Q13285 461 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 SLC16A10Q8TF71 515 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 AIFM3Q96NN9 605 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 FNBP1Q96RU3 617 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 ZNF341Q9BYN7 854 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 TTC12Q9H892 705 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 CBX8Q9HC52 389 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 EXOC7Q9UPT5 735 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 NOD1Q9Y239 953 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 LUC7L2Q9Y383 392 aaKnown RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 CALUO43852 315 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 PLEKHA8P1O95397 391 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 AXDND1Q5T1B0 1012 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 MTERF4Q7Z6M4 381 aaKnown RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 ZNF512BQ96KM6 892 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 MRPL44Q9H9J2 332 aaKnown RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 GOLGA6L10A6NI86 522 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 hCG_1984214I3L0E3 225 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 GCNT3O95395 438 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 ZNF445P59923 1031 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 IFI16Q16666 785 aaKnown RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 STRIP1Q5VSL9 837 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 KRT26Q7Z3Y9 468 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 ZNF713Q8N859 430 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 EHBP1Q8NDI1 1231 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 KAZALD1Q96I82 304 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 SYNCQ9H7C4 482 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 ZNRF3Q9ULT6 936 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 NMT2O60551 498 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 SLC39A14Q15043 492 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 OTUD6AQ7L8S5 288 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 NELFCDQ8IXH7 590 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 MB21D2Q8IYB1 491 aaPredicted RBP8.27□□□□□ -1.08
SYNE1-213ENST00000448038 PGBD1Q96JS3 809 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 CCDC42Q96M95 316 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 TMEM47Q9BQJ4 181 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 TEKT3Q9BXF9 490 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 NFE2L3Q9Y4A8 694 aa8.27□□□□□ -1.08
SYNE1-213ENST00000448038 UBXN2AP68543 259 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 PRPF4BQ13523 1007 aaKnown RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 STYK1Q6J9G0 422 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 GPBP1Q86WP2 473 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 ENAHQ8N8S7 591 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 KIAA1468Q9P260 1216 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 ANKRD62A6NC57 917 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 SORBS3O60504 671 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 OSBPP22059 807 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 LONP1P36776 959 aaKnown RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 RBM10P98175 930 aaKnown RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 BIRC3Q13489 604 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 CDC37Q16543 378 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 FBXO33Q7Z6M2 555 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 TBCKQ8TEA7 893 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 CTNNBL1Q8WYA6 563 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 SYMPKQ92797 1274 aaKnown RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 DRC1Q96MC2 740 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 JADE2Q9NQC1 790 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 RAPGEF1Q13905 1077 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 KCTD2Q14681 263 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 SEPT2Q15019 361 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 ZNF771Q7L3S4 317 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 APBB1IPQ7Z5R6 666 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-213ENST00000448038 FAM160B2Q86V87 743 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 IFT172Q9UG01 1749 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 CHGBP05060 677 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 DNM2P50570 870 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 NDUFA8P51970 172 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 FANCCQ00597 558 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 NELFBQ8WX92 580 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 CEP95Q96GE4 821 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 POLR3EQ9NVU0 708 aa8.27□□□□□ -1.09
SYNE1-213ENST00000448038 PNMA6FA0A0J9YX94 578 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 DPEP1P16444 411 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 CCNA1P78396 465 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 TMTC3Q6ZXV5 915 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 DAGLAQ9Y4D2 1042 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 WDR19Q8NEZ3 1342 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 CCDC175P0C221 793 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 SLC10A5Q5PT55 438 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 KRBA2Q6ZNG9 492 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 TRMT44Q8IYL2 757 aaKnown RBP8.26□□□□□ -1.09
SYNE1-213ENST00000448038 CSRNP2Q9H175 543 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 CENPHQ9H3R5 247 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 ZNF609O15014 1411 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 ADGRB2O60241 1585 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 USP17L5A8MUK1 530 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 PPP6R2O75170 966 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 CTNNA2P26232 953 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 CNGA4Q8IV77 575 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 SLC10A4Q96EP9 437 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 LY9Q9HBG7 655 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 LAD1O00515 517 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 SNAP25P60880 206 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 KRT83P78385 493 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 CYP4A11Q02928 519 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 DPH6Q7L8W6 267 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 IGSF22Q8N9C0 903 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 WRNIP1Q96S55 665 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 MAP7D2Q96T17 732 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 FAM193AP78312 1265 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms