RNA–Protein interactions for RNA: ENST00000447873.5

SGCE-207, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-207ENST00000447873 HOMER1Q86YM7 354 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 RPAP3Q9H6T3 665 aaPredicted RBP22.59■■□□□ 1.21
SGCE-207ENST00000447873 PLA2G6O60733 806 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 PDIA4P13667 645 aaKnown RBP22.59■■□□□ 1.21
SGCE-207ENST00000447873 FOSBP53539 338 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 FSTL1Q12841 308 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 PKN1Q16512 942 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 SYDE2Q5VT97 1194 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 FAM160B2Q86V87 743 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 C8orf76Q96K31 380 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 AIFM3Q96NN9 605 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 PIGSQ96S52 555 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 JMJD4Q9H9V9 463 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 CHMP5Q9NZZ3 219 aa22.59■■□□□ 1.21
SGCE-207ENST00000447873 A0A0G2JLL6 359 aaPredicted RBP22.58■■□□□ 1.2
SGCE-207ENST00000447873 H3BQV1 296 aa22.58■■□□□ 1.2
SGCE-207ENST00000447873 STX6O43752 255 aa22.58■■□□□ 1.2
SGCE-207ENST00000447873 SCG2P13521 617 aa22.58■■□□□ 1.2
SGCE-207ENST00000447873 NUCB2P80303 420 aa22.58■■□□□ 1.2
SGCE-207ENST00000447873 PFKFB3Q16875 520 aaPredicted RBP22.58■■□□□ 1.2
SGCE-207ENST00000447873 IFFO2Q5TF58 517 aa22.58■■□□□ 1.2
SGCE-207ENST00000447873 PRRT2Q7Z6L0 340 aaPredicted RBP22.58■■□□□ 1.2
SGCE-207ENST00000447873 WNK4Q96J92 1243 aa22.58■■□□□ 1.2
SGCE-207ENST00000447873 GJA5P36382 358 aa22.57■■□□□ 1.2
SGCE-207ENST00000447873 SAPCD2Q86UD0 394 aa22.57■■□□□ 1.2
SGCE-207ENST00000447873 KIFC2Q96AC6 838 aa22.57■■□□□ 1.2
SGCE-207ENST00000447873 PRR12Q9ULL5 1215 aa22.57■■□□□ 1.2
SGCE-207ENST00000447873 LOC285556D6RIA3 1793 aa22.57■■□□□ 1.2
SGCE-207ENST00000447873 VPS37CA5D8V6 355 aaPredicted RBP22.56■■□□□ 1.2
SGCE-207ENST00000447873 FLOT1O75955 427 aa22.56■■□□□ 1.2
SGCE-207ENST00000447873 XBP1P17861 261 aa22.56■■□□□ 1.2
SGCE-207ENST00000447873 SNAPC2Q13487 334 aa22.56■■□□□ 1.2
SGCE-207ENST00000447873 PKP1Q13835 747 aa22.56■■□□□ 1.2
SGCE-207ENST00000447873 TRIM29Q14134 588 aa22.56■■□□□ 1.2
SGCE-207ENST00000447873 SAMD1Q6SPF0 538 aaPredicted RBP22.56■■□□□ 1.2
SGCE-207ENST00000447873 GADL1Q6ZQY3 521 aa22.56■■□□□ 1.2
SGCE-207ENST00000447873 PROCA1Q8NCQ7 364 aaPredicted RBP22.56■■□□□ 1.2
SGCE-207ENST00000447873 FBXO28Q9NVF7 368 aa22.56■■□□□ 1.2
SGCE-207ENST00000447873 PNMA6FA0A0J9YX94 578 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 PRPF38AQ8NAV1 312 aaKnown RBP22.55■■□□□ 1.2
SGCE-207ENST00000447873 MTMR8Q96EF0 704 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 SLF1Q9BQI6 1058 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 TMEM88BA6NKF7 163 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 ZBTB5O15062 677 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 ZBTB48P10074 688 aaPredicted RBP22.55■■□□□ 1.2
SGCE-207ENST00000447873 CDC37Q16543 378 aaPredicted RBP22.55■■□□□ 1.2
SGCE-207ENST00000447873 FASTKD5Q7L8L6 764 aaKnown RBP22.55■■□□□ 1.2
SGCE-207ENST00000447873 HEATR3Q7Z4Q2 680 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 FBXO18Q8NFZ0 1043 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 GJB4Q9NTQ9 266 aa22.55■■□□□ 1.2
SGCE-207ENST00000447873 WDR33Q9C0J8 1336 aaKnown RBP22.54■■□□□ 1.2
SGCE-207ENST00000447873 PARP14Q460N5 1801 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L15C9J2P7 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L13C9JLJ4 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L11C9JVI0 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L18D6R9N7 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L22D6RA61 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L17D6RBQ6 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L19D6RCP7 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L20D6RJB6 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 ZNF157P51786 506 aaPredicted RBP22.54■■□□□ 1.2
SGCE-207ENST00000447873 GUCY1B3Q02153 619 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 USP17L24Q0WX57 530 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 MKRN3Q13064 507 aaKnown RBP22.54■■□□□ 1.2
SGCE-207ENST00000447873 SPRYD7Q5W111 196 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 OTUD7BQ6GQQ9 843 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 GPKOWQ92917 476 aaPredicted RBP eCLIP22.54■■□□□ 1.2
SGCE-207ENST00000447873 ABT1Q9ULW3 272 aaKnown RBP22.54■■□□□ 1.2
SGCE-207ENST00000447873 MTMR6Q9Y217 621 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 TLL2Q9Y6L7 1015 aa22.54■■□□□ 1.2
SGCE-207ENST00000447873 GTF2A2P52657 109 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 QRICH1Q2TAL8 776 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 TREML2Q5T2D2 321 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 KRT40Q6A162 431 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 RGMBQ6NW40 437 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 CATSPERGQ6ZRH7 1159 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 RGS22Q8NE09 1264 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 VPS54Q9P1Q0 977 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 PPP1R9AQ9ULJ8 1098 aa22.53■■□□□ 1.2
SGCE-207ENST00000447873 BRD1O95696 1058 aa22.52■■□□□ 1.2
SGCE-207ENST00000447873 SNAP25P60880 206 aa22.52■■□□□ 1.2
SGCE-207ENST00000447873 COG2Q14746 738 aa22.52■■□□□ 1.2
SGCE-207ENST00000447873 WWC2Q6AWC2 1192 aa22.52■■□□□ 1.2
SGCE-207ENST00000447873 BARHL2Q9NY43 387 aa22.52■■□□□ 1.2
SGCE-207ENST00000447873 hCG_1984214I3L0E3 225 aa22.51■■□□□ 1.19
SGCE-207ENST00000447873 CETPP11597 493 aa22.51■■□□□ 1.19
SGCE-207ENST00000447873 FOXD4L5Q5VV16 416 aaPredicted RBP22.51■■□□□ 1.19
SGCE-207ENST00000447873 ZNF713Q8N859 430 aaPredicted RBP22.51■■□□□ 1.19
SGCE-207ENST00000447873 FOXD4L4Q8WXT5 416 aaPredicted RBP22.51■■□□□ 1.19
SGCE-207ENST00000447873 RANBP17Q9H2T7 1088 aaKnown RBP22.51■■□□□ 1.19
SGCE-207ENST00000447873 SH3GLB2Q9NR46 395 aa22.51■■□□□ 1.19
SGCE-207ENST00000447873 AGTPBP1Q9UPW5 1226 aa22.51■■□□□ 1.19
SGCE-207ENST00000447873 STXBP3O00186 592 aa22.5■■□□□ 1.19
SGCE-207ENST00000447873 ZSCAN22P10073 491 aaPredicted RBP22.5■■□□□ 1.19
SGCE-207ENST00000447873 RASAL3Q86YV0 1011 aa22.5■■□□□ 1.19
SGCE-207ENST00000447873 CCDC148Q8NFR7 591 aa22.5■■□□□ 1.19
SGCE-207ENST00000447873 CCDC12Q8WUD4 166 aaPredicted RBP22.5■■□□□ 1.19
SGCE-207ENST00000447873 KCNJ14Q9UNX9 436 aa22.5■■□□□ 1.19
SGCE-207ENST00000447873 ZDHHC9Q9Y397 364 aa22.5■■□□□ 1.19
SGCE-207ENST00000447873 RLFQ13129 1914 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms