RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 EIF6P56537 245 aaKnown RBP13.29□□□□□ -0.28
MSH6-204ENST00000445503 IRX5P78411 483 aaPredicted RBP13.29□□□□□ -0.28
MSH6-204ENST00000445503 MDM2Q00987 491 aaPredicted RBP13.29□□□□□ -0.28
MSH6-204ENST00000445503 AMPD3Q01432 767 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 TMTC3Q6ZXV5 915 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 C2CD5Q86YS7 1000 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 PLCD3Q8N3E9 789 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 PNKPQ96T60 521 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 FAM107BQ9H098 131 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 ZNF658Q5TYW1 1059 aaPredicted RBP13.29□□□□□ -0.28
MSH6-204ENST00000445503 SND1Q7KZF4 910 aaKnown RBP eCLIP13.29□□□□□ -0.286e-6■□□□□ 9.2
MSH6-204ENST00000445503 CABP7Q86V35 215 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 MAPKAPK5Q8IW41 473 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 NOA1Q8NC60 698 aaKnown RBP13.29□□□□□ -0.28
MSH6-204ENST00000445503 AFAP1L1Q8TED9 768 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 IFT81Q8WYA0 676 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 TUBGCP2Q9BSJ2 902 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 FAM204AQ9H8W3 233 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 SLC39A2Q9NP94 309 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 RWDD2AQ9UIY3 292 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 RAD51AP2Q09MP3 1159 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 DPYDQ12882 1025 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 IKQ13123 557 aaPredicted RBP13.28□□□□□ -0.28
MSH6-204ENST00000445503 ADGRA1Q86SQ6 560 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 ALS2CR12Q96Q35 445 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 FUT8Q9BYC5 575 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 TSPYL1Q9H0U9 437 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 KCND1Q9NSA2 647 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 CXCR5P32302 372 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 TBX2Q13207 712 aaPredicted RBP13.28□□□□□ -0.28
MSH6-204ENST00000445503 TUBB2AQ13885 445 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 ERFEQ4G0M1 354 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 TUBB2BQ9BVA1 445 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 PPP1R3GB7ZBB8 358 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 TTC19Q6DKK2 380 aaPredicted RBP13.28□□□□□ -0.28
MSH6-204ENST00000445503 TGFBRAP1Q8WUH2 860 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 HAUS4Q9H6D7 363 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 BMP2KQ9NSY1 1161 aaPredicted RBP13.28□□□□□ -0.28
MSH6-204ENST00000445503 USP17L3A6NCW0 530 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 USP17L4A6NCW7 530 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 ZRANB2O95218 330 aaKnown RBP eCLIP13.28□□□□□ -0.28
MSH6-204ENST00000445503 ABL1P00519 1130 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 PRDX5P30044 214 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 GNAQP50148 359 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 USP17L1Q7RTZ2 530 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 SECISBP2LQ93073 1101 aaKnown RBP13.28□□□□□ -0.28
MSH6-204ENST00000445503 PHF20Q9BVI0 1012 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 UBA5Q9GZZ9 404 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 NLRC4Q9NPP4 1024 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 TBC1D7Q9P0N9 293 aa13.28□□□□□ -0.28
MSH6-204ENST00000445503 MPHOSPH10O00566 681 aaKnown RBP13.27□□□□□ -0.28
MSH6-204ENST00000445503 TNNI2P48788 182 aa13.27□□□□□ -0.28
MSH6-204ENST00000445503 HLTFQ14527 1009 aaKnown RBP eCLIP13.27□□□□□ -0.282e-7■■■□□ 16.9
MSH6-204ENST00000445503 TMEM139Q8IV31 216 aa13.27□□□□□ -0.28
MSH6-204ENST00000445503 SETDB2Q96T68 719 aa13.27□□□□□ -0.28
MSH6-204ENST00000445503 LOC102724428A0A0B4J2F2 783 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 BICDL2A1A5D9 508 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 H3BQF6 201 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 WNT7AO00755 349 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 BAG3O95817 575 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 ACTN2P35609 894 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 SIK1P57059 783 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 TMEM266Q2M3C6 531 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 RRAGAQ7L523 313 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 BIN2Q9UBW5 565 aaPredicted RBP13.27□□□□□ -0.29
MSH6-204ENST00000445503 TACC3Q9Y6A5 838 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 ERVV-1B6SEH8 477 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 F8W031 263 aaPredicted RBP13.27□□□□□ -0.29
MSH6-204ENST00000445503 ZEB2O60315 1214 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 DDAH1O94760 285 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 CLSTN1O94985 981 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 LDHBP07195 334 aaKnown RBP13.27□□□□□ -0.29
MSH6-204ENST00000445503 SARSP49591 514 aaKnown RBP13.27□□□□□ -0.29
MSH6-204ENST00000445503 ERVK-24P63145 666 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 MECOMQ03112 1051 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 C2orf54Q08AI8 447 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 PTPROQ16827 1216 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 EXOC4Q96A65 974 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 ZNF512BQ96KM6 892 aaPredicted RBP13.27□□□□□ -0.29
MSH6-204ENST00000445503 TSG101Q99816 390 aa13.27□□□□□ -0.29
MSH6-204ENST00000445503 IBSPP21815 317 aaPredicted RBP13.26□□□□□ -0.29
MSH6-204ENST00000445503 DNM2P50570 870 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 TUBB4BP68371 445 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 MB21D1Q8N884 522 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 KIFC2Q96AC6 838 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 C6orf50Q9HD87 102 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 NOP2P46087 812 aaKnown RBP13.26□□□□□ -0.29
MSH6-204ENST00000445503 RPS8P62241 208 aaKnown RBP13.26□□□□□ -0.29
MSH6-204ENST00000445503 PICALMQ13492 652 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 RASGRP2Q7LDG7 609 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 GOLGA5Q8TBA6 731 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 HPS3Q969F9 1004 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 CNOT6LQ96LI5 555 aaKnown RBP13.26□□□□□ -0.29
MSH6-204ENST00000445503 IFIH1Q9BYX4 1025 aaKnown RBP13.26□□□□□ -0.29
MSH6-204ENST00000445503 TRIM66O15016 1216 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 RNF40O75150 1001 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 LONP1P36776 959 aaKnown RBP13.26□□□□□ -0.29
MSH6-204ENST00000445503 VGLL2Q8N8G2 317 aa13.26□□□□□ -0.29
MSH6-204ENST00000445503 BCCIPQ9P287 314 aaKnown RBP eCLIP13.26□□□□□ -0.29
MSH6-204ENST00000445503 SHTN1A0MZ66 631 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms