RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 PCDHA4Q9UN74 947 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 WASF2Q9Y6W5 498 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ANKRD34BA5PLL1 514 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 LRRC10BA6NIK2 292 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 TSPY2A6NKD2 308 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 OFD1O75665 1012 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 FKBP9O95302 570 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 TSPY3P0CV98 308 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 TSPY8P0CW00 308 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 TSPY1Q01534 308 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 G3BP1Q13283 466 aaKnown RBP eCLIP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 SKOR2Q2VWA4 1001 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ALDH1L2Q3SY69 923 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 RPS26P11Q5JNZ5 115 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 WIPI1Q5MNZ9 446 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 TDRD10Q5VZ19 366 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 MAP1SQ66K74 1059 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 CFAP161Q6P656 301 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 FKBP9P1Q75LS8 142 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 PHACTR4Q8IZ21 702 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC7A14Q8TBB6 771 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 SNRNP27Q8WVK2 155 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ELMO3Q96BJ8 720 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 NSUN5Q96P11 429 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 CDK15Q96Q40 435 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 MENTQ9BUN1 341 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC52A2Q9HAB3 445 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 POLMQ9NP87 494 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 OSGEPQ9NPF4 335 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ANLNQ9NQW6 1124 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 POLR3KQ9Y2Y1 108 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 LTBP3Q9NS15 1303 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 A0A1W2PRQ8 180 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ORC4O43929 436 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ULK1O75385 1050 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 SRGNP10124 158 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ITPKAP23677 461 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 BTKQ06187 659 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 LLGL1Q15334 1064 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 KIAA0753Q2KHM9 967 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 MZT2AQ6P582 158 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 Q6ZNB5 142 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 C4orf50Q6ZRC1 276 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 FGD2Q7Z6J4 655 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 OR13H1Q8NG92 308 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF516Q92618 1163 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 FGD4Q96M96 766 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 TBCBQ99426 244 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 CRB3Q9BUF7 120 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 GBP3Q9H0R5 595 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 THG1LQ9NWX6 298 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 GMIPQ9P107 970 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 PCDHGB6Q9Y5F9 930 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM170AA1A519 330 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ASGR2P07307 311 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 IFIT1P09914 478 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 NME1P15531 152 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ZKSCAN1P17029 563 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 KPNA1P52294 538 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TYRO3Q06418 890 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 GRM1Q13255 1194 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MSL1Q68DK7 614 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MIER2Q8N344 545 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TBATAQ96M53 351 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 NUDT16L1Q9BRJ7 211 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC26A6Q9BXS9 759 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ZC3H12CQ9C0D7 883 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF576Q9H609 170 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 SAMD15Q9P1V8 674 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MAGED2Q9UNF1 606 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 PCDHGB3Q9Y5G1 929 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 PDE2AO00408 941 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ATE1O95260 518 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ARNTP27540 789 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 KRT9P35527 623 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 GPSM2P81274 684 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 SKOR1P84550 965 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 PLAURQ03405 335 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 FAAP100Q0VG06 881 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 KLF1Q13351 362 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ARMC3Q5W041 872 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ARMCX6Q7L4S7 300 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MTDHQ86UE4 582 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MYCT1Q8N699 235 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 NAXEQ8NCW5 288 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ATG4CQ96DT6 458 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 APOL5Q9BWW9 433 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 AP1M1Q9BXS5 423 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 CLEC4MQ9H2X3 399 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 HELLSQ9NRZ9 838 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 IRAK4Q9NWZ3 460 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 HRH3Q9Y5N1 445 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 CORINQ9Y5Q5 1042 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF891A8MT65 544 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 J3KRW8 73 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 CD2BP2O95400 341 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ITGAVP06756 1048 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 KRT20P35900 424 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 GUCY1A3Q02108 690 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms