RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 NSMCE1Q8WV22 266 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 CCDC127Q96BQ5 260 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 HINFPQ9BQA5 517 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 ABCC2Q92887 1545 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 GIPC1O14908 333 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 PCCAP05165 728 aaPredicted RBP18.94■□□□□ 0.62
PTPRF-209ENST00000438120 OR52Z1P0C646 297 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 TUBB2AQ13885 445 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 TUBB2BQ9BVA1 445 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 PRAMEF22A3QJZ6 481 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 ADAMTS12P58397 1594 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 PAK2Q13177 524 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 CAPN12Q6ZSI9 719 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 ANKRD42Q8N9B4 389 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 DDX41Q9UJV9 622 aaKnown RBP18.94■□□□□ 0.62
PTPRF-209ENST00000438120 CFAP57Q96MR6 1250 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 BEGAINQ9BUH8 593 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 SWAP70Q9UH65 585 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 AMFRQ9UKV5 643 aa18.94■□□□□ 0.62
PTPRF-209ENST00000438120 KCNK3O14649 394 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 CRKLP46109 303 aaKnown RBP18.93■□□□□ 0.62
PTPRF-209ENST00000438120 TNFAIP1Q13829 316 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 EPSTI1Q96J88 318 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 NOL3O60936 208 aaKnown RBP18.93■□□□□ 0.62
PTPRF-209ENST00000438120 CTAGE3PQ8IX95 158 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 ARHGEF2Q92974 986 aaKnown RBP18.93■□□□□ 0.62
PTPRF-209ENST00000438120 ZSWIM6Q9HCJ5 1215 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 SLFN13Q68D06 897 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 PLA2G4DQ86XP0 818 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 MTMR6Q9Y217 621 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 CFAP65Q6ZU64 1925 aaKnown RBP18.93■□□□□ 0.62
PTPRF-209ENST00000438120 VSIG1Q86XK7 387 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 PCDHA7Q9UN72 937 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 ADCY9O60503 1353 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 NDUFA8P51970 172 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 SCRN1Q12765 414 aa18.93■□□□□ 0.62
PTPRF-209ENST00000438120 MKRN1Q9UHC7 482 aaKnown RBP18.93■□□□□ 0.62
PTPRF-209ENST00000438120 POLR2FP61218 127 aaKnown RBP18.92■□□□□ 0.62
PTPRF-209ENST00000438120 TAOK1Q7L7X3 1001 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 SYMPKQ92797 1274 aaKnown RBP18.92■□□□□ 0.62
PTPRF-209ENST00000438120 ANKFY1Q9P2R3 1169 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 MRPL11Q9Y3B7 192 aaKnown RBP18.92■□□□□ 0.62
PTPRF-209ENST00000438120 ZNF804BA4D1E1 1349 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 LOC102724428A0A0B4J2F2 783 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 GNA14O95837 355 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 SIK1P57059 783 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 ATP11AP98196 1134 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 FANCLQ9NW38 375 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 MAP3K15Q6ZN16 1313 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 TMEM2Q9UHN6 1383 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 P4HA1P13674 534 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 PTGDRQ13258 359 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 NAA25Q14CX7 972 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 FAM178BQ8IXR5 827 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 PDIA3P30101 505 aaKnown RBP18.92■□□□□ 0.62
PTPRF-209ENST00000438120 KRT81Q14533 505 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 ADCK5Q3MIX3 580 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 KRT71Q3SY84 523 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 SEPT14Q6ZU15 432 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 UBE2Q2Q8WVN8 375 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 RSAD2Q8WXG1 361 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 SAR1BQ9Y6B6 198 aa18.92■□□□□ 0.62
PTPRF-209ENST00000438120 RASGRP4Q8TDF6 673 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 RUFY4Q6ZNE9 571 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 RPUSD2Q8IZ73 545 aaKnown RBP18.91■□□□□ 0.62
PTPRF-209ENST00000438120 ARMCX3Q9UH62 379 aaPredicted RBP18.91■□□□□ 0.62
PTPRF-209ENST00000438120 PEG3Q9GZU2 1588 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 OR8K1Q8NGG5 319 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 TSC1Q92574 1164 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 PGBD1Q96JS3 809 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 RTEL1Q9NZ71 1219 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 CCPG1Q9ULG6 757 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 SYNJ2BP-COX16A0A087WUM0 186 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 DYNLL1P63167 89 aaKnown RBP18.91■□□□□ 0.62
PTPRF-209ENST00000438120 PPM1KQ8N3J5 372 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 SEC31BQ9NQW1 1179 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 COX16Q9P0S2 106 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 DNMT1P26358 1616 aaKnown RBP18.91■□□□□ 0.62
PTPRF-209ENST00000438120 B4GALNT4Q76KP1 1039 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 GJA10Q969M2 543 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 MCUR1Q96AQ8 359 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 PCDHA1Q9Y5I3 950 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 MED23Q9ULK4 1368 aa18.91■□□□□ 0.62
PTPRF-209ENST00000438120 LRRIQ4A6NIV6 560 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 ATF7P17544 494 aaPredicted RBP18.9■□□□□ 0.62
PTPRF-209ENST00000438120 DENND2CQ68D51 928 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 UNC5CLQ8IV45 518 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 ZBTB8OSQ8IWT0 167 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 TEKT3Q9BXF9 490 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 PDE8BO95263 885 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 PTPN21Q16825 1174 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 ABCB5Q2M3G0 1257 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 SLFN12Q8IYM2 578 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 SEPT10Q9P0V9 454 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 TSKSQ9UJT2 592 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 RPN1P04843 607 aaKnown RBP18.9■□□□□ 0.62
PTPRF-209ENST00000438120 OAS2P29728 719 aaKnown RBP18.9■□□□□ 0.62
PTPRF-209ENST00000438120 ADAM9Q13443 819 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 EP400NLQ6ZTU2 488 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 M0R2C6 588 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms