RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DEFA1P59665 94 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 DEFA3P59666 94 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 ZC3H6P61129 1189 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 PSPC1Q8WXF1 523 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 TBC1D23Q9NUY8 699 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 UHRF1BP1LA0JNW5 1464 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 PTPDC1A2A3K4 754 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 MIF4GDA9UHW6 222 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 NNTQ13423 1086 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 GEN1Q17RS7 908 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 KRT80Q6KB66 452 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 ANO5Q75V66 913 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 TEX11Q8IYF3 940 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 CCDC105Q8IYK2 499 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 RILPQ96NA2 401 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 UGGT2Q9NYU1 1516 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 SMAPO00193 183 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 RNF113AO15541 343 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 U2AF2P26368 475 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS53-204ENST00000437048 CENPUQ71F23 418 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 SND1Q7KZF4 910 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS53-204ENST00000437048 EPC1Q9H2F5 836 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 LAMC2Q13753 1193 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 LONRF2Q1L5Z9 754 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 GPIHBP1Q8IV16 184 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 GIPC2Q8TF65 315 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 ZBTB40Q9NUA8 1239 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 RPS6KB1P23443 525 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 NFKBIAP25963 317 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CFAP61Q8NHU2 1237 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 TRIM63Q969Q1 353 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 DHTKD1Q96HY7 919 aaPredicted RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 YEATS2Q9ULM3 1422 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 TCOF1Q13428 1488 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 MRC2Q9UBG0 1479 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 SYNMO15061 1565 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 ARHGEF10O15013 1369 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 GRID2IPA4D2P6 1211 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 PGRMC1O00264 195 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 CLEC17AQ6ZS10 378 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 KIFC2Q96AC6 838 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CARD6Q9BX69 1037 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CD2APQ9Y5K6 639 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 GRM8O00222 908 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CMA1P23946 247 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 ARHGAP27Q6ZUM4 889 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 ZNF710Q8N1W2 664 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CACTINQ8WUQ7 758 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 KIF1BO60333 1816 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 XRCC5P13010 732 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 CASP14P31944 242 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 AP2B1P63010 937 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CUL3Q13618 768 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 KRT12Q99456 494 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 BOLA2Q9H3K6 86 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 DNMT1P26358 1616 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 PRAG1Q86YV5 1406 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CAPRIN2Q6IMN6 1127 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 RSBN1LQ6PCB5 846 aaPredicted RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 BZW1Q7L1Q6 419 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 ZNF148Q9UQR1 794 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 NFE2L3Q9Y4A8 694 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 TTC36A6NLP5 189 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 SRGAP2BP0DMP2 458 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 ARHGDIAP52565 204 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 PRAM1Q96QH2 718 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 PUF60Q9UHX1 559 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 TRPC6Q9Y210 931 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 SYCP2Q9BX26 1530 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 STX1BP61266 288 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 GRM1Q13255 1194 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CARD10Q9BWT7 1032 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 EPS8L2Q9H6S3 715 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 IL1RAPL2Q9NP60 686 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 RRAGDQ9NQL2 400 aaPredicted RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 SYNGAP1Q96PV0 1343 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 MINDY4BA8MYZ0 360 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 STXBP3O00186 592 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 AP3B1O00203 1094 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 PYGLP06737 847 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 TFAP4Q01664 338 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 HADHQ16836 314 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 ZNF215Q9UL58 517 aaPredicted RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 ARHGEF37A1IGU5 675 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 NSFP46459 744 aaKnown RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 RAP1GDS1P52306 607 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 KLHL30Q0D2K2 578 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 AP1B1Q10567 949 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 KSR2Q6VAB6 950 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 NBPF5PQ86XG9 351 aaPredicted RBP7.85□□□□□ -1.15
VPS53-204ENST00000437048 MTA3Q9BTC8 594 aa7.85□□□□□ -1.15
VPS53-204ENST00000437048 CLTAP09496 248 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 CHMLP26374 656 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 KPNB1Q14974 876 aaKnown RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 SLC30A9Q6PML9 568 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 MXD3Q9BW11 206 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 GGPS1O95749 300 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 SNRPA1P09661 255 aaKnown RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 ANLNQ9NQW6 1124 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms