RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 BCAMP50895 628 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 MICALL1Q8N3F8 863 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 NLRP1Q9C000 1473 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 GYG1P46976 350 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 SEPT6Q14141 434 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 PPP4R1Q8TF05 950 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 ZNF526Q8TF50 670 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 TNNQ9UQP3 1299 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 TSTA3Q13630 321 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 C8orf34Q49A92 452 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 CMTR1Q8N1G2 835 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 RDH13Q8NBN7 331 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 NEO1Q92859 1461 aa13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 TRIM37O94972 964 aa13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 RPS8P62241 208 aaKnown RBP13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 RNASELQ05823 741 aaKnown RBP13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 ABCB5Q2M3G0 1257 aa13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 PLCB1Q9NQ66 1216 aa13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 SEPT9Q9UHD8 586 aaPredicted RBP13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 OTUD7BQ6GQQ9 843 aa13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 RBSNQ9H1K0 784 aa13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 TAB2Q9NYJ8 693 aa13.27□□□□□ -0.28
CCDC88A-207ENST00000436346 CABP7Q86V35 215 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 DNAJC10Q8IXB1 793 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 BABAM1Q9NWV8 329 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 TECP42680 631 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 CRKLP46109 303 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 FAM160B1Q5W0V3 765 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 DISC1Q9NRI5 854 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 RRAGAQ7L523 313 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 DIS3L2Q8IYB7 885 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 E7EWF7 191 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 NAA25Q14CX7 972 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 ABI1Q8IZP0 508 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 NME8Q8N427 588 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 HAUS1Q96CS2 278 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 IWS1Q96ST2 819 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 APOL6Q9BWW8 343 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 MRPL11Q9Y3B7 192 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 KLHL30Q0D2K2 578 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 XKR9Q5GH70 373 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 ARHGEF2Q92974 986 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 CSRNP1Q96S65 589 aa13.27□□□□□ -0.29
CCDC88A-207ENST00000436346 IL13P35225 146 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 PDE6CP51160 858 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 PPP2R5BQ15173 497 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 PANK4Q9NVE7 773 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 ATXN8OSP0DMR3 200 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 NEDD9Q14511 834 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 MGARPQ8TDB4 240 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 ADCY9O60503 1353 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 ZMYM6O95789 1325 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 GOLGA5Q8TBA6 731 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 POMGNT1Q8WZA1 660 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 CARD14Q9BXL6 1004 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 CFAP221Q4G0U5 840 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 KCNG1Q9UIX4 513 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 PNMA6EA0A0J9YXQ4 647 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 FANCCQ00597 558 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 VCXQ9H320 206 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 VPS37BQ9H9H4 285 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 XRCC6P12956 609 aaKnown RBP eCLIP13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 ABCB4P21439 1286 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 BTDP43251 543 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 MAP7Q14244 749 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 B4GALNT4Q76KP1 1039 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 ZNF654Q8IZM8 581 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 VCX3BQ9H321 246 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 ANKARQ7Z5J8 1434 aa13.26□□□□□ -0.29
CCDC88A-207ENST00000436346 KCNJ18B7U540 433 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 MYCP01106 439 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 KCNJ12Q14500 433 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 HHATQ5VTY9 493 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 CEP104O60308 925 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 GSTA1P08263 222 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 GSTA2P09210 222 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 LGSNQ5TDP6 509 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 RIMS1Q86UR5 1692 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 KRT15P19012 456 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 RNF17Q9BXT8 1623 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 H0YCG3 227 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 EVCP57679 992 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 KLHL7Q8IXQ5 586 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 PCDHB13Q9Y5F0 798 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 FAM178BQ8IXR5 827 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 IFNB1P01574 187 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 ZNF496Q96IT1 587 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 DISP1Q96F81 1524 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 RPS6KA2Q15349 733 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 KRT26Q7Z3Y9 468 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 SMC5Q8IY18 1101 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 IRAK4Q9NWZ3 460 aa13.25□□□□□ -0.29
CCDC88A-207ENST00000436346 PHBP35232 272 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 NLRP12P59046 1061 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 MORC3Q14149 939 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 N4BP1O75113 896 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 THRAP3Q9Y2W1 955 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 ZBTB38Q8NAP3 1195 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 CCDC94Q9BW85 323 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms