RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 DISC1Q9NRI5 854 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 CCDC66A2RUB6 948 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 SMIM22K7EJ46 135 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 N4BP3O15049 544 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 CASP14P31944 242 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 STX17P56962 302 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 IL17AQ16552 155 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 LINC00116Q8NCU8 138 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 WDR66Q8TBY9 1149 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 NELFBQ8WX92 580 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 AK8Q96MA6 479 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 MTRQ99707 1265 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 THAP9Q9H5L6 903 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 ABHD10Q9NUJ1 306 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 CDK5RAP2Q96SN8 1893 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 KCNJ18B7U540 433 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 NPHP1O15259 732 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 SMARCA1P28370 1054 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 PPP4CP60510 307 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 STIM1Q13586 685 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 KCNJ12Q14500 433 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 WHAMMP3Q1A5X7 153 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 TEX35Q5T0J7 233 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 C15orf52Q6ZUT6 534 aaKnown RBP15.41■□□□□ 0.06
COL6A3-207ENST00000433762 AMOTL1Q8IY63 956 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 MSANTD4Q8NCY6 345 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 IQCDQ96DY2 449 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 DESI2Q9BSY9 194 aa15.41■□□□□ 0.06
COL6A3-207ENST00000433762 MCM7P33993 719 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 STAT6P42226 847 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 USP5P45974 858 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 ADSSL1Q8N142 457 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 ZNF287Q9HBT7 754 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 RAB21Q9UL25 225 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 hCG_1642624A0A1W2PR95 340 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 CTAGE9A4FU28 777 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 RHOBTB3O94955 611 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 TBC1D8O95759 1140 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 FXR1P51114 621 aaKnown RBP eCLIP15.4■□□□□ 0.06
COL6A3-207ENST00000433762 CHMP4BP1P59074 171 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 MTF1Q14872 753 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 PTPN21Q16825 1174 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 COBLL1Q53SF7 1204 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 DTHD1Q6ZMT9 781 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 PNMA1Q8ND90 353 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 KBTBD4Q9NVX7 518 aa15.4■□□□□ 0.06
COL6A3-207ENST00000433762 ZHX1Q9UKY1 873 aaPredicted RBP15.4■□□□□ 0.06
COL6A3-207ENST00000433762 CCDC194A0A1B0GVG4 234 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 RPS6KA4O75676 772 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 KARSQ15046 597 aaKnown RBP15.39■□□□□ 0.05
COL6A3-207ENST00000433762 NOM1Q5C9Z4 860 aaKnown RBP15.39■□□□□ 0.05
COL6A3-207ENST00000433762 TBC1D9BQ66K14 1250 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 RETREG2Q8NC44 543 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 LEMD3Q9Y2U8 911 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 NHSQ6T4R5 1651 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 A0A0G2JS52 829 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 LGALS16A8MUM7 142 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 PRDX5P30044 214 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 DZIP1Q86YF9 867 aaKnown RBP15.39■□□□□ 0.05
COL6A3-207ENST00000433762 SMYD4Q8IYR2 804 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-207ENST00000433762 DHTKD1Q96HY7 919 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-207ENST00000433762 SETDB2Q96T68 719 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 NAPGQ99747 312 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-207ENST00000433762 SPZ1Q9BXG8 430 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 PARD6BQ9BYG5 372 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 BARHL2Q9NY43 387 aa15.39■□□□□ 0.05
COL6A3-207ENST00000433762 NMT2O60551 498 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 BAG3O95817 575 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 LDHCP07864 332 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 CASP1P29466 404 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 FAM47AQ5JRC9 791 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 TPTE2Q6XPS3 522 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 CCDC47Q96A33 483 aaKnown RBP15.38■□□□□ 0.05
COL6A3-207ENST00000433762 DNAJC7Q99615 494 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 MCM9Q9NXL9 1143 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 MAD2L2Q9UI95 211 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 TAF1LQ8IZX4 1826 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 PSMA7O14818 248 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 TFAP4Q01664 338 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 GIMAP8Q8ND71 665 aaPredicted RBP15.38■□□□□ 0.05
COL6A3-207ENST00000433762 GJD4Q96KN9 370 aaPredicted RBP15.38■□□□□ 0.05
COL6A3-207ENST00000433762 NUP58Q9BVL2 599 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 BLZF1Q9H2G9 400 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 IL17RBQ9NRM6 502 aa15.38■□□□□ 0.05
COL6A3-207ENST00000433762 TRPC5Q9UL62 973 aaPredicted RBP15.38■□□□□ 0.05
COL6A3-207ENST00000433762 BAZ2BQ9UIF8 2168 aaKnown RBP15.37■□□□□ 0.05
COL6A3-207ENST00000433762 PALM3A6NDB9 673 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-207ENST00000433762 hCG_1984214I3L0E3 225 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 ERLIN1O75477 346 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 CYP2C19P33261 490 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 PRCPP42785 496 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 ERVK-24P63145 666 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 NAALADL2Q58DX5 795 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 ZNF713Q8N859 430 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-207ENST00000433762 OR8K1Q8NGG5 319 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 ZNF507Q8TCN5 953 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 NUP88Q99567 741 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-207ENST00000433762 GBP3Q9H0R5 595 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 HAUS4Q9H6D7 363 aa15.37■□□□□ 0.05
COL6A3-207ENST00000433762 LZTFL1Q9NQ48 299 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms