RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 APLP1P51693 650 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 SSRP1Q08945 709 aaKnown RBP9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 CCL15Q16663 113 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 SH3D19Q5HYK7 790 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 TREML2Q5T2D2 321 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 FASTKD5Q7L8L6 764 aaKnown RBP9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 FAM160B2Q86V87 743 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 KIFC2Q96AC6 838 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 RRP36Q96EU6 259 aaKnown RBP9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 SLF1Q9BQI6 1058 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 SPZ1Q9BXG8 430 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 VAT1LQ9HCJ6 419 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 FBXO28Q9NVF7 368 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 RBM27Q9P2N5 1060 aaKnown RBP9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 ORC3Q9UBD5 711 aaPredicted RBP9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 FEM1BQ9UK73 627 aa9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 POLR2AP24928 1970 aaKnown RBP9.17□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L15C9J2P7 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L13C9JLJ4 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L11C9JVI0 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L18D6R9N7 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L22D6RA61 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L17D6RBQ6 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L19D6RCP7 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L20D6RJB6 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 DEXIO95424 95 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 SLC10A3P09131 477 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 IRX3P78415 501 aaPredicted RBP9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 USP17L24Q0WX57 530 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 FUT2Q10981 343 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 PABPC4Q13310 644 aaKnown RBP eCLIP9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 NTRK3Q16288 839 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 SLC35G1Q2M3R5 365 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 HEATR3Q7Z4Q2 680 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 NBPF11Q86T75 865 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 ADGRF4Q8IZF3 695 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 PROCA1Q8NCQ7 364 aaPredicted RBP9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 SMARCC2Q8TAQ2 1214 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 CHURC1Q8WUH1 139 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 BRI3BPQ8WY22 251 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 WASF1Q92558 559 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 RNF26Q9BY78 433 aaPredicted RBP9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 CREBZFQ9NS37 354 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 PRR12Q9ULL5 1215 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 AGTPBP1Q9UPW5 1226 aa9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 CTDP1Q9Y5B0 961 aaPredicted RBP9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 V9GY48 417 aaPredicted RBP9.16□□□□□ -0.94
HMGA1P4-201ENST00000428643 PRPF3O43395 683 aaKnown RBP9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 CYTH3O43739 400 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 SCG2P13521 617 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 PDCP20941 246 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 SNAP25P60880 206 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 TRIM29Q14134 588 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 CDC37Q16543 378 aaPredicted RBP9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 BTNL9Q6UXG8 535 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 GPKOWQ92917 476 aaPredicted RBP eCLIP9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 CCDC102AQ96A19 550 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 PIGSQ96S52 555 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 ALG1Q9BT22 464 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 JMJD4Q9H9V9 463 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 CWC22Q9HCG8 908 aaKnown RBP9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 PPP1R9AQ9ULJ8 1098 aa9.15□□□□□ -0.94
HMGA1P4-201ENST00000428643 VPS37CA5D8V6 355 aaPredicted RBP9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 MANSC4A6NHS7 340 aaPredicted RBP9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 H3BQV1 296 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 ZBTB5O15062 677 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 PLA2G6O60733 806 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 OSBPP22059 807 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 SMARCA1P28370 1054 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 MOGSQ13724 837 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 COG2Q14746 738 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 PFKFB3Q16875 520 aaPredicted RBP9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 QRICH1Q2TAL8 776 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 CYP4F22Q6NT55 531 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 CCDC174Q6PII3 467 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 CATSPERGQ6ZRH7 1159 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 PRPF38AQ8NAV1 312 aaKnown RBP9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 ATG4CQ96DT6 458 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 HHIPL1Q96JK4 782 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 MS4A4AQ96JQ5 239 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 C8orf76Q96K31 380 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 AIFM3Q96NN9 605 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 RIOX1Q9H6W3 641 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 PNMA3Q9UL41 463 aa9.14□□□□□ -0.95
HMGA1P4-201ENST00000428643 TRPM7Q96QT4 1865 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 MYPNQ86TC9 1320 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 PCNTO95613 3336 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 PNMA6FA0A0J9YX94 578 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 RASSF10A6NK89 507 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 SPDYE16A6NNV3 312 aaPredicted RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 FAM155AB1AL88 458 aaPredicted RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 BTBD19C9JJ37 291 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 PDHXO00330 501 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 VWA5AO00534 786 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 ZBED4O75132 1171 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 FDPSP14324 419 aaKnown RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 XBP1P17861 261 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 HOXA7P31268 230 aaPredicted RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 DSG3P32926 999 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 GUCY1B3Q02153 619 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms