RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 KCNA3P22001 575 aa11.85□□□□□ -0.51
HDAC9-210ENST00000428307 LMOD1P29536 600 aaPredicted RBP11.85□□□□□ -0.51
HDAC9-210ENST00000428307 NCAPHQ15003 741 aa11.85□□□□□ -0.51
HDAC9-210ENST00000428307 CERKLQ49MI3 558 aaPredicted RBP11.85□□□□□ -0.51
HDAC9-210ENST00000428307 SOGA3Q5TF21 947 aa11.85□□□□□ -0.51
HDAC9-210ENST00000428307 STAMQ92783 540 aa11.85□□□□□ -0.51
HDAC9-210ENST00000428307 BPIFA3Q9BQP9 254 aa11.85□□□□□ -0.51
HDAC9-210ENST00000428307 RIOX1Q9H6W3 641 aa11.85□□□□□ -0.51
HDAC9-210ENST00000428307 ZBTB12Q9Y330 459 aaPredicted RBP11.85□□□□□ -0.51
HDAC9-210ENST00000428307 CCDC96Q2M329 555 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 ASPRV1Q53RT3 343 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 CCDC93Q567U6 631 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 GALNT17Q6IS24 598 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 C4orf32Q8N8J7 132 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 CCDC12Q8WUD4 166 aaPredicted RBP11.84□□□□□ -0.51
HDAC9-210ENST00000428307 SMARCE1Q969G3 411 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 EHD4Q9H223 541 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 C6orf50Q9HD87 102 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 BIN2Q9UBW5 565 aaPredicted RBP11.84□□□□□ -0.51
HDAC9-210ENST00000428307 MAN1B1Q9UKM7 699 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 PLIN4Q96Q06 1357 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 ADAMTSL1Q8N6G6 1762 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 ZBTB7AO95365 584 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 GDF11O95390 407 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 SLFN14P0C7P3 912 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 SNHG28P0DPA3 235 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 SMARCA1P28370 1054 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 GNA11P29992 359 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 ZNF543Q08ER8 600 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 LRMPQ12912 555 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 LETM2Q2VYF4 491 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 CCDC144BQ3MJ40 725 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 JAKMIP3Q5VZ66 844 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 KANK3Q6NY19 840 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.84□□□□□ -0.51
HDAC9-210ENST00000428307 FILIP1Q7Z7B0 1213 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 DAGLBQ8NCG7 672 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 CCDC17Q96LX7 622 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 TMEM60Q9H2L4 133 aa11.84□□□□□ -0.51
HDAC9-210ENST00000428307 MORC2Q9Y6X9 1032 aaPredicted RBP11.84□□□□□ -0.51
HDAC9-210ENST00000428307 CLRN2A0PK11 232 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 SMTNL1A8MU46 457 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 ATP1A3P13637 1013 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 EEF2P13639 858 aaKnown RBP11.83□□□□□ -0.52
HDAC9-210ENST00000428307 SEPT2Q15019 361 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 ELOA2Q8IYF1 753 aaPredicted RBP11.83□□□□□ -0.52
HDAC9-210ENST00000428307 RTKN2Q8IZC4 609 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 ADGRF4Q8IZF3 695 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 MRFAP1L1Q96HT8 127 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 PYCARDQ9ULZ3 195 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 SCN9AQ15858 1988 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 MYO3BQ8WXR4 1341 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 TCP10L2B9ZVM9 353 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 PSMD14O00487 310 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 CCNT1O60563 726 aaKnown RBP11.83□□□□□ -0.52
HDAC9-210ENST00000428307 SMC2O95347 1197 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 SARSP49591 514 aaKnown RBP11.83□□□□□ -0.52
HDAC9-210ENST00000428307 TPM4P67936 248 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 HSP90AA4PQ58FG1 418 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 PAGE5Q96GU1 130 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 JMJD4Q9H9V9 463 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 TMEM260Q9NX78 707 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 IFNKQ9P0W0 207 aa11.83□□□□□ -0.52
HDAC9-210ENST00000428307 PPP1R1BQ9UD71 204 aaPredicted RBP11.83□□□□□ -0.52
HDAC9-210ENST00000428307 PP2D1A8MPX8 630 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 TPM3P06753 285 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 MYL5Q02045 173 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 ARID5BQ14865 1188 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 NONOQ15233 471 aaKnown RBP eCLIP11.82□□□□□ -0.52
HDAC9-210ENST00000428307 NT5DC1Q5TFE4 455 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 ARL6IP4Q66PJ3 421 aaKnown RBP11.82□□□□□ -0.52
HDAC9-210ENST00000428307 DTHD1Q6ZMT9 781 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 CCDC34Q96HJ3 373 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 CSRNP1Q96S65 589 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 HSD3B7Q9H2F3 369 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 ATF5Q9Y2D1 282 aaPredicted RBP11.82□□□□□ -0.52
HDAC9-210ENST00000428307 USP17L10C9JJH3 530 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 IKBKBO14920 756 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 RSBN1LQ6PCB5 846 aaPredicted RBP11.82□□□□□ -0.52
HDAC9-210ENST00000428307 REXO1Q8N1G1 1221 aaKnown RBP11.82□□□□□ -0.52
HDAC9-210ENST00000428307 OGFOD1Q8N543 542 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 IQUBQ8NA54 791 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 TBCKQ8TEA7 893 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 NAP1L5Q96NT1 182 aaPredicted RBP11.82□□□□□ -0.52
HDAC9-210ENST00000428307 XPO4Q9C0E2 1151 aaKnown RBP11.82□□□□□ -0.52
HDAC9-210ENST00000428307 KANSL2Q9H9L4 492 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 FANCLQ9NW38 375 aa11.82□□□□□ -0.52
HDAC9-210ENST00000428307 PPP1R11O60927 126 aaPredicted RBP11.81□□□□□ -0.52
HDAC9-210ENST00000428307 OFD1O75665 1012 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 SLC1A4P43007 532 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 JAG1P78504 1218 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 MORC3Q14149 939 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 NOLC1Q14978 699 aaKnown RBP eCLIP11.81□□□□□ -0.52
HDAC9-210ENST00000428307 KARSQ15046 597 aaKnown RBP11.81□□□□□ -0.52
HDAC9-210ENST00000428307 GPATCH4Q5T3I0 446 aaKnown RBP11.81□□□□□ -0.52
HDAC9-210ENST00000428307 TATDN1Q6P1N9 297 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 KRT25Q7Z3Z0 450 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 SIAH1Q8IUQ4 282 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 SPATA20Q8TB22 786 aa11.81□□□□□ -0.52
HDAC9-210ENST00000428307 CACTINQ8WUQ7 758 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms