RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ADD1P35611 737 aaKnown RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 NOGQ13253 232 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 COL9A3Q14050 684 aaPredicted RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 COG2Q14746 738 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 SYDE2Q5VT97 1194 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 TMTC3Q6ZXV5 915 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 RASAL3Q86YV0 1011 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 CCDC12Q8WUD4 166 aaPredicted RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 KIFC2Q96AC6 838 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 IPO9Q96P70 1041 aaKnown RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 SLF1Q9BQI6 1058 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 SPZ1Q9BXG8 430 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 SLC26A6Q9BXS9 759 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 RNF26Q9BY78 433 aaPredicted RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 NCOA5Q9HCD5 579 aaKnown RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 AGTPBP1Q9UPW5 1226 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 CD2BP2O95400 341 aaKnown RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 DEXIO95424 95 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 SLC10A3P09131 477 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 SMCR8Q8TEV9 937 aaPredicted RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 CNKSR2Q8WXI2 1034 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 HPS5Q9UPZ3 1129 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 BAZ2BQ9UIF8 2168 aaKnown RBP11.68□□□□□ -0.54
CD44-207ENST00000425428 MYPNQ86TC9 1320 aa11.68□□□□□ -0.54
CD44-207ENST00000425428 CDC27P30260 824 aa11.68□□□□□ -0.54
CD44-207ENST00000425428 HOMER1Q86YM7 354 aa11.68□□□□□ -0.54
CD44-207ENST00000425428 CCAR1Q8IX12 1150 aaKnown RBP11.68□□□□□ -0.54
CD44-207ENST00000425428 MB21D1Q8N884 522 aa11.68□□□□□ -0.54
CD44-207ENST00000425428 NUP88Q99567 741 aaPredicted RBP11.68□□□□□ -0.54
CD44-207ENST00000425428 ORC3Q9UBD5 711 aaPredicted RBP11.68□□□□□ -0.54
CD44-207ENST00000425428 SLC45A1Q9Y2W3 748 aa11.68□□□□□ -0.54
CD44-207ENST00000425428 PTPDC1A2A3K4 754 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 H3BQV1 296 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 hCG_1984214I3L0E3 225 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 PRPF3O43395 683 aaKnown RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 FMNL1O95466 1100 aaPredicted RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 ALDH1A1P00352 501 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 HOXA7P31268 230 aaPredicted RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 CUL4AQ13619 759 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 IFFO2Q5TF58 517 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 BTNL9Q6UXG8 535 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 CATSPERGQ6ZRH7 1159 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 ANKRD23Q86SG2 305 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 ADGRF4Q8IZF3 695 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 STAG2Q8N3U4 1231 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 ZNF713Q8N859 430 aaPredicted RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 SPRYD3Q8NCJ5 442 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 CCDC148Q8NFR7 591 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 PARK7Q99497 189 aaKnown RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 UBA5Q9GZZ9 404 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 BRMS1Q9HCU9 246 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 ZCCHC17Q9NP64 241 aaKnown RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 V9GY48 417 aaPredicted RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 LOC285556D6RIA3 1793 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 STK36Q9NRP7 1315 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 PNMA6FA0A0J9YX94 578 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 RASSF10A6NK89 507 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 PLEKHA8P1O95397 391 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 LARGE1O95461 756 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 SLC16A2P36021 539 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 GNL2Q13823 731 aaKnown RBP11.67□□□□□ -0.54
CD44-207ENST00000425428 SAFBQ15424 915 aaKnown RBP eCLIP11.67□□□□□ -0.54
CD44-207ENST00000425428 PIBF1Q8WXW3 757 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 DDX11Q96FC9 970 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 CAPNS2Q96L46 248 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 FOXD4L1Q9NU39 408 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 PPP1R9AQ9ULJ8 1098 aa11.67□□□□□ -0.54
CD44-207ENST00000425428 PDHXO00330 501 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 ZBTB5O15062 677 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 GJB2P29033 226 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 FBXO11Q86XK2 927 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 FAM177A1Q8N128 213 aaPredicted RBP11.66□□□□□ -0.54
CD44-207ENST00000425428 SRBD1Q8N5C6 995 aaKnown RBP11.66□□□□□ -0.54
CD44-207ENST00000425428 PHKBQ93100 1093 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 AMNQ9BXJ7 453 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 GLT8D2Q9H1C3 349 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 RIOX1Q9H6W3 641 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 PRR12Q9ULL5 1215 aa11.66□□□□□ -0.54
CD44-207ENST00000425428 DSG3P32926 999 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 COPB2P35606 906 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 GCLCP48506 637 aaPredicted RBP11.65□□□□□ -0.54
CD44-207ENST00000425428 CCNA1P78396 465 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 PLS1Q14651 629 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 CDC37Q16543 378 aaPredicted RBP11.65□□□□□ -0.54
CD44-207ENST00000425428 TTBK2Q6IQ55 1244 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 CYP4F22Q6NT55 531 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 HEATR3Q7Z4Q2 680 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 CMTR1Q8N1G2 835 aaKnown RBP11.65□□□□□ -0.54
CD44-207ENST00000425428 NSUN7Q8NE18 718 aaKnown RBP11.65□□□□□ -0.54
CD44-207ENST00000425428 ALG1Q9BT22 464 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 CNTNAP5Q8WYK1 1306 aa11.65□□□□□ -0.54
CD44-207ENST00000425428 SCG2P13521 617 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 CALML3P27482 149 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 GNA11P29992 359 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 GJA5P36382 358 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 MAP2K2P36507 400 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 SLC4A3P48751 1232 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 OAZ1P54368 228 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 NAPAP54920 295 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 TREML2Q5T2D2 321 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms