RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 CCDC136Q96JN2 1154 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 SLC38A10Q9HBR0 1119 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 IL17RBQ9NRM6 502 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 TOMM22Q9NS69 142 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 MAP3K20Q9NYL2 800 aaKnown RBP7.52□□□□□ -1.21
USP54-202ENST00000413442 ZNF214Q9UL59 606 aaPredicted RBP7.52□□□□□ -1.21
USP54-202ENST00000413442 PLXNB2O15031 1838 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 A0A0G2JMZ2 1700 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 TMEM232C9JQI7 657 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 PRDM1O75626 825 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 IGHA2P01877 340 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 TFRCP02786 760 aaKnown RBP7.51□□□□□ -1.21
USP54-202ENST00000413442 INHAP05111 366 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 CYP2B6P20813 491 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 SMARCA1P28370 1054 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 CAP1Q01518 475 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 PLS1Q14651 629 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 TMEM132BQ14DG7 1078 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 FAM47AQ5JRC9 791 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 RNF20Q5VTR2 975 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 POTEEQ6S8J3 1075 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 CCDC129Q6ZRS4 1044 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 ZNF589Q86UQ0 364 aaPredicted RBP7.51□□□□□ -1.21
USP54-202ENST00000413442 NCAPG2Q86XI2 1143 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 TEX2Q8IWB9 1127 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 SPICE1Q8N0Z3 855 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 ARRDC4Q8NCT1 418 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 RGS22Q8NE09 1264 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 NCOA7Q8NI08 942 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 SH3TC2Q8TF17 1288 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 U2AF1L4Q8WU68 220 aaKnown RBP7.51□□□□□ -1.21
USP54-202ENST00000413442 ATG4CQ96DT6 458 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 DDX11Q96FC9 970 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 MPHOSPH6Q99547 160 aaKnown RBP7.51□□□□□ -1.21
USP54-202ENST00000413442 MAP3K14Q99558 947 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 TMEM47Q9BQJ4 181 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.51□□□□□ -1.21
USP54-202ENST00000413442 PORCNQ9H237 461 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 ZSWIM5Q9P217 1185 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 NR2E3Q9Y5X4 410 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 PFASO15067 1338 aa7.51□□□□□ -1.21
USP54-202ENST00000413442 COL11A1P12107 1806 aaPredicted RBP7.5□□□□□ -1.21
USP54-202ENST00000413442 LAMA4Q16363 1823 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 RAD21O60216 631 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 SNHG28P0DPA3 235 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 GSPT1P15170 499 aaKnown RBP7.5□□□□□ -1.21
USP54-202ENST00000413442 MCCP23508 829 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 ADORA2AP29274 412 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 SOX10P56693 466 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 EVX2Q03828 476 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 ASPRV1Q53RT3 343 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 KIAA1755Q5JYT7 1200 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 WDR78Q5VTH9 848 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 MAMDC4Q6UXC1 1216 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 NECAB2Q7Z6G3 386 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 REPS2Q8NFH8 660 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 ZSCAN10Q96SZ4 725 aaPredicted RBP7.5□□□□□ -1.21
USP54-202ENST00000413442 MMP19Q99542 508 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 UBAC1Q9BSL1 405 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 SEZ6LQ9BYH1 1024 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 KAT14Q9H8E8 782 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 OGDHLQ9ULD0 1010 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 SYNGAP1Q96PV0 1343 aa7.5□□□□□ -1.21
USP54-202ENST00000413442 DNAJC25-GNG10A0A024R161 153 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 POTEFA5A3E0 1075 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ASB14A6NK59 587 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 SMIM22K7EJ46 135 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 SEPT4O43236 478 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 KDM4AO75164 1064 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ICAM1P05362 532 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 HMGB1P09429 215 aaKnown RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 ELNP15502 786 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 EN2P19622 333 aaPredicted RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 IRX6P78412 446 aaPredicted RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 CACNB2Q08289 660 aaPredicted RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 IKQ13123 557 aaPredicted RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 KRT32Q14532 448 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 PPP2R5BQ15173 497 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 MTFR1Q15390 333 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ZNF792Q3KQV3 632 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 TSGA10IPQ3SY00 556 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 RRP12Q5JTH9 1297 aaKnown RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 PRPF38BQ5VTL8 546 aaKnown RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 SNRNP48Q6IEG0 339 aaKnown RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 RALYLQ86SE5 291 aaKnown RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 STK11IPQ8N1F8 1099 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ANKRD35Q8N283 1001 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 TRIB2Q92519 343 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 KIFC2Q96AC6 838 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 MAML3Q96JK9 1138 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 TMEM87BQ96K49 555 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 TINF2Q9BSI4 451 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 NBPF3Q9H094 633 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 UNC93B1Q9H1C4 597 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ABHD16BQ9H3Z7 469 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ACAD9Q9H845 621 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 PPP4R2Q9NY27 417 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ADD3Q9UEY8 706 aaKnown RBP7.49□□□□□ -1.21
USP54-202ENST00000413442 PRR12Q9ULL5 1215 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 PLXNA1Q9UIW2 1896 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms