RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 SEC63Q9UGP8 760 aaKnown RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 ISY1Q9ULR0 285 aaKnown RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 FZD1Q9UP38 647 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 POLR2AP24928 1970 aaKnown RBP7.66□□□□□ -1.18
VPS41-204ENST00000413141 BTBD18B2RXH4 712 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 STXBP3O00186 592 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 VEGFAP15692 232 aaPredicted RBP7.66□□□□□ -1.18
VPS41-204ENST00000413141 PTPRAP18433 802 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 KRT2P35908 639 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 SLC16A2P36021 539 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 GNL2Q13823 731 aaKnown RBP7.66□□□□□ -1.18
VPS41-204ENST00000413141 ZYXQ15942 572 aaKnown RBP7.66□□□□□ -1.18
VPS41-204ENST00000413141 FAM83BQ5T0W9 1011 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 MYSM1Q5VVJ2 828 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 TYW1BQ6NUM6 668 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 PPP1R18Q6NYC8 613 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 BTNL9Q6UXG8 535 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 HEATR3Q7Z4Q2 680 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 NOSTRINQ8IVI9 506 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 DAGLBQ8NCG7 672 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 OXER1Q8TDS5 423 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 ZKSCAN4Q969J2 545 aaPredicted RBP7.66□□□□□ -1.18
VPS41-204ENST00000413141 MTMR8Q96EF0 704 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 KIAA1683Q9H0B3 1180 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 FOXP1Q9H334 677 aaPredicted RBP7.66□□□□□ -1.18
VPS41-204ENST00000413141 JMJD4Q9H9V9 463 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 AS3MTQ9HBK9 375 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 BRMS1Q9HCU9 246 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 PICK1Q9NRD5 415 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 LMBRD1Q9NUN5 540 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 SNCAIPQ9Y6H5 919 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 ELP1O95163 1332 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 LOC285556D6RIA3 1793 aa7.66□□□□□ -1.18
VPS41-204ENST00000413141 PNMA6FA0A0J9YX94 578 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 USP17L10C9JJH3 530 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 TMEM232C9JQI7 657 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 ZBTB5O15062 677 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 WDR46O15213 610 aaKnown RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 PPP1R11O60927 126 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 PRPF40AO75400 957 aaKnown RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 USP2O75604 605 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 POTEIP0CG38 1075 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 POTEJP0CG39 1038 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 CALML3P27482 149 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 NF2P35240 595 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 STAT2P52630 851 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 NAPAP54920 295 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 NLRP5P59047 1200 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 IKQ13123 557 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 NR5A1Q13285 461 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 MTMR2Q13614 643 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 PRKG1Q13976 671 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 VGLL4Q14135 290 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 CDC37Q16543 378 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 CSPP1Q1MSJ5 1256 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 QRICH1Q2TAL8 776 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 PARP14Q460N5 1801 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 SYDE2Q5VT97 1194 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 ATL3Q6DD88 541 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 REM2Q8IYK8 340 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 CCDC12Q8WUD4 166 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 LEO1Q8WVC0 666 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 LPAR1Q92633 364 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 TNFRSF25Q93038 417 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 ZNF396Q96N95 335 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 USP28Q96RU2 1077 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 WDR18Q9BV38 432 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 FTOQ9C0B1 505 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS41-204ENST00000413141 SCAND2PQ9GZW5 306 aaPredicted RBP7.65□□□□□ -1.18
VPS41-204ENST00000413141 VAT1LQ9HCJ6 419 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 CFAP45Q9UL16 551 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 PCDHA4Q9UN74 947 aa7.65□□□□□ -1.18
VPS41-204ENST00000413141 BAZ2BQ9UIF8 2168 aaKnown RBP7.64□□□□□ -1.19
VPS41-204ENST00000413141 TCHHQ07283 1943 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 ESYT2A0FGR8 921 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 M0R2N6 131 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 ADAMTS3O15072 1205 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 PPP1R12BO60237 982 aaPredicted RBP7.64□□□□□ -1.19
VPS41-204ENST00000413141 PLA2G6O60733 806 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 VCAM1P19320 739 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 IREB2P48200 963 aaKnown RBP7.64□□□□□ -1.19
VPS41-204ENST00000413141 NASPP49321 788 aaPredicted RBP7.64□□□□□ -1.19
VPS41-204ENST00000413141 USP14P54578 494 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 BACE1P56817 501 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 DGKZQ13574 1117 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 MAP3K11Q16584 847 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 EARS2Q5JPH6 523 aaKnown RBP7.64□□□□□ -1.19
VPS41-204ENST00000413141 GALNT17Q6IS24 598 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.64□□□□□ -1.19
VPS41-204ENST00000413141 FAM160B2Q86V87 743 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 BLIDQ8IZY5 108 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 ZNF280CQ8ND82 737 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 SPATA32Q96LK8 384 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 C12orf42Q96LP6 360 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 ZMYND12Q9H0C1 365 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 POLR3EQ9NVU0 708 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 RTEL1Q9NZ71 1219 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 TFIP11Q9UBB9 837 aaKnown RBP7.64□□□□□ -1.19
VPS41-204ENST00000413141 PRR12Q9ULL5 1215 aa7.64□□□□□ -1.19
VPS41-204ENST00000413141 PTPRFP10586 1907 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms