RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 AXDND1Q5T1B0 1012 aaPredicted RBP6.34□□□□□ -1.39
EPHA4-202ENST00000409854 SLFN13Q68D06 897 aa6.34□□□□□ -1.39
EPHA4-202ENST00000409854 PPP1R18Q6NYC8 613 aa6.34□□□□□ -1.39
EPHA4-202ENST00000409854 TRPM4Q8TD43 1214 aa6.34□□□□□ -1.39
EPHA4-202ENST00000409854 IPO4Q8TEX9 1081 aaKnown RBP6.34□□□□□ -1.39
EPHA4-202ENST00000409854 CPVLQ9H3G5 476 aa6.34□□□□□ -1.39
EPHA4-202ENST00000409854 TMX2Q9Y320 296 aa6.34□□□□□ -1.39
EPHA4-202ENST00000409854 PPP2R3BQ9Y5P8 575 aa6.34□□□□□ -1.39
EPHA4-202ENST00000409854 COL11A1P12107 1806 aaPredicted RBP6.34□□□□□ -1.4
EPHA4-202ENST00000409854 A0A0U1RQG5 324 aaPredicted RBP6.34□□□□□ -1.4
EPHA4-202ENST00000409854 A0A1W2PRG0 241 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 ADAMTS3O15072 1205 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 LIG1P18858 919 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 NLRP5P59047 1200 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 CEBPZQ03701 1054 aaKnown RBP6.34□□□□□ -1.4
EPHA4-202ENST00000409854 BTNL9Q6UXG8 535 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 BLIDQ8IZY5 108 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 CCDC12Q8WUD4 166 aaPredicted RBP6.34□□□□□ -1.4
EPHA4-202ENST00000409854 PIGSQ96S52 555 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 JMJD4Q9H9V9 463 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 ARHGEF10LQ9HCE6 1279 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 MTMR7Q9Y216 660 aa6.34□□□□□ -1.4
EPHA4-202ENST00000409854 ZC3H4Q9UPT8 1303 aaKnown RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 FAM237AA0A1B0GTK4 181 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 F5H6K3 240 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 NDUFB10O96000 172 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 TRAPPC10P48553 1259 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 KLRC3Q07444 240 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 RBM43Q6ZSC3 357 aaKnown RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ADGRF4Q8IZF3 695 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ENGASEQ8NFI3 743 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 UBA5Q9GZZ9 404 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 DEFB129Q9H1M3 183 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 DDX19AQ9NUU7 478 aaKnown RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 RNF181Q9P0P0 153 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 SEC63Q9UGP8 760 aaKnown RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ZNF112Q9UJU3 913 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 PNMA6FA0A0J9YX94 578 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 FAM205CA6NFA0 338 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 LETM1O95202 739 aaPredicted RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ASNSP08243 561 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 HIRAP54198 1017 aaPredicted RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 SNW1Q13573 536 aaKnown RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 TTBK2Q6IQ55 1244 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 LRSAM1Q6UWE0 723 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 HEATR3Q7Z4Q2 680 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 GAS2L3Q86XJ1 694 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 GOLPH3LQ9H4A5 285 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 GPCPD1Q9NPB8 672 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 SMCHD1A6NHR9 2005 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 GOLGA6L4A6NEF3 574 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ZBTB5O15062 677 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 PLA2G6O60733 806 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 PPP1R11O60927 126 aaPredicted RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 EPS15P42566 896 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 SLC1A4P43007 532 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ME1P48163 572 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ATP2B2Q01814 1243 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 CCDC96Q2M329 555 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 ANGEL2Q5VTE6 544 aaKnown RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 KCTD1Q719H9 257 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 MIGA2Q7L4E1 593 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 JMYQ8N9B5 988 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 PIBF1Q8WXW3 757 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 HOOK2Q96ED9 719 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 L3MBTL3Q96JM7 780 aaPredicted RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 NOL7Q9UMY1 257 aaKnown RBP6.33□□□□□ -1.4
EPHA4-202ENST00000409854 PCDHA6Q9UN73 950 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 PCDHB6Q9Y5E3 794 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 PCDHA8Q9Y5H6 950 aa6.33□□□□□ -1.4
EPHA4-202ENST00000409854 A0A0G2JMZ2 1700 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 CTNND1O60716 968 aaKnown RBP6.32□□□□□ -1.4
EPHA4-202ENST00000409854 CUTAO60888 179 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 NR1I2O75469 434 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 BMP15O95972 392 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 CMA1P23946 247 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 ECE1P42892 770 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 FAM160A1Q05DH4 1040 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 NOM1Q5C9Z4 860 aaKnown RBP6.32□□□□□ -1.4
EPHA4-202ENST00000409854 C9orf131Q5VYM1 1079 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 CCAR1Q8IX12 1150 aaKnown RBP6.32□□□□□ -1.4
EPHA4-202ENST00000409854 BICD2Q8TD16 824 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 MRPS27Q92552 414 aaKnown RBP6.32□□□□□ -1.4
EPHA4-202ENST00000409854 FUCA2Q9BTY2 467 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 CLSTN2Q9H4D0 955 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 SH2D4AQ9H788 454 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 GOPCQ9HD26 462 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 ADARB2Q9NS39 739 aaKnown RBP6.32□□□□□ -1.4
EPHA4-202ENST00000409854 FBXO2Q9UK22 296 aaPredicted RBP6.32□□□□□ -1.4
EPHA4-202ENST00000409854 CEP131Q9UPN4 1083 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 HPSEQ9Y251 543 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 SYCE3A1L190 88 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 USP17L10C9JJH3 530 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 DDNO94850 711 aaPredicted RBP6.32□□□□□ -1.4
EPHA4-202ENST00000409854 BMP3P12645 472 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 PTPREP23469 700 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 GNA11P29992 359 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 NAPAP54920 295 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 KIAA1755Q5JYT7 1200 aa6.32□□□□□ -1.4
EPHA4-202ENST00000409854 HOMER1Q86YM7 354 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms