RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 FOXN1O15353 648 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 ATE1O95260 518 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 PTMSP20962 102 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 ETFBP38117 255 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 EIF6P56537 245 aaKnown RBP6.77□□□□□ -1.33
CLK1-202ENST00000409403 CLCQ05315 142 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 TRIM28Q13263 835 aaKnown RBP6.77□□□□□ -1.33
CLK1-202ENST00000409403 CCDC184Q52MB2 194 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 EXOC6Q8TAG9 804 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 CRBNQ96SW2 442 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 LNPKQ9C0E8 428 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 MYH16Q9H6N6 1097 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 VIRMAQ69YN4 1812 aaKnown RBP6.76□□□□□ -1.33
CLK1-202ENST00000409403 PAPPAQ13219 1627 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 ELNP15502 786 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 CNGB1Q14028 1251 aaPredicted RBP6.76□□□□□ -1.33
CLK1-202ENST00000409403 ZC3H12AQ5D1E8 599 aaKnown RBP6.76□□□□□ -1.33
CLK1-202ENST00000409403 NBPF6Q5VWK0 638 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 NBPF4Q96M43 638 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 RUSC1Q9BVN2 902 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 PCDHGC5Q9Y5F6 944 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 TACC3Q9Y6A5 838 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 PRAG1Q86YV5 1406 aa6.76□□□□□ -1.33
CLK1-202ENST00000409403 PRR36Q9H6K5 1346 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 DCDC2CA8MYV0 355 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 WISP1O95388 367 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 GIPRP48546 466 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 PRRT3Q5FWE3 981 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 IGF2-ASQ6U949 168 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 ACAD11Q709F0 780 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 CYFIP1Q7L576 1253 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 TMPRSS13Q9BYE2 586 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 RNF208Q9H0X6 261 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 NOP53Q9NZM5 478 aaKnown RBP6.75□□□□□ -1.33
CLK1-202ENST00000409403 PRKAG3Q9UGI9 489 aa6.75□□□□□ -1.33
CLK1-202ENST00000409403 BRD4O60885 1362 aaPredicted RBP6.75□□□□□ -1.33
CLK1-202ENST00000409403 LRPPRCP42704 1394 aaKnown RBP6.75□□□□□ -1.33
CLK1-202ENST00000409403 MEGF11A6BM72 1044 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 FAM229AH3BQW9 127 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 HTR3BO95264 441 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 ID3Q02535 119 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 PDE4BQ07343 736 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 TNNI3KQ59H18 835 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 AKAP4Q5JQC9 854 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 TAF3Q5VWG9 929 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 KIAA1211Q6ZU35 1233 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 ANKS3Q6ZW76 656 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 PODNQ7Z5L7 613 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 OR6P1Q8NGX9 317 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 MRPL18Q9H0U6 180 aaKnown RBP6.74□□□□□ -1.33
CLK1-202ENST00000409403 NMRK2Q9NPI5 230 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 POGKQ9P215 609 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 PRAMEF27A3QJZ7 478 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 XRCC6P12956 609 aaKnown RBP eCLIP6.74□□□□□ -1.33
CLK1-202ENST00000409403 CANXP27824 592 aaKnown RBP6.74□□□□□ -1.33
CLK1-202ENST00000409403 ERVK-24P63145 666 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 LRRFIP1Q32MZ4 808 aaKnown RBP6.74□□□□□ -1.33
CLK1-202ENST00000409403 NUTM2GQ5VZR2 741 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 C12orf40Q86WS4 652 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 RBBP8NLQ8NC74 664 aaPredicted RBP6.74□□□□□ -1.33
CLK1-202ENST00000409403 SUGCTQ9HAC7 445 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 CYP4F12Q9HCS2 524 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 BTG4Q9NY30 223 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 STK32BQ9NY57 414 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 CORINQ9Y5Q5 1042 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 CSADQ9Y600 493 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 TECPR2O15040 1411 aa6.74□□□□□ -1.33
CLK1-202ENST00000409403 QSER1Q2KHR3 1735 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 PARP4Q9UKK3 1724 aaKnown RBP6.73□□□□□ -1.33
CLK1-202ENST00000409403 CRYBG1Q9Y4K1 1723 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 KIF1AQ12756 1690 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 SPATA31A3Q5VYP0 1347 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 TMPRSS2O15393 492 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 RING1Q06587 406 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 SLC15A2Q16348 729 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 CCDC144BQ3MJ40 725 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.73□□□□□ -1.33
CLK1-202ENST00000409403 LSRQ86X29 649 aaPredicted RBP6.73□□□□□ -1.33
CLK1-202ENST00000409403 FAM169BQ8N8A8 192 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 ANP32BQ92688 251 aaKnown RBP6.73□□□□□ -1.33
CLK1-202ENST00000409403 OSBPL2Q9H1P3 480 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 PRDM10Q9NQV6 1147 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 PICK1Q9NRD5 415 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 HIF3AQ9Y2N7 669 aa6.73□□□□□ -1.33
CLK1-202ENST00000409403 R3HCC1Q9Y3T6 440 aaKnown RBP6.73□□□□□ -1.33
CLK1-202ENST00000409403 CDC42BPGQ6DT37 1551 aa6.72□□□□□ -1.33
CLK1-202ENST00000409403 SMAD7O15105 426 aaKnown RBP6.72□□□□□ -1.33
CLK1-202ENST00000409403 PLCG1P19174 1290 aa6.72□□□□□ -1.33
CLK1-202ENST00000409403 PTF1AQ7RTS3 328 aa6.72□□□□□ -1.33
CLK1-202ENST00000409403 BEND7Q8N7W2 519 aaPredicted RBP6.72□□□□□ -1.33
CLK1-202ENST00000409403 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.72□□□□□ -1.33
CLK1-202ENST00000409403 SMG8Q8ND04 991 aaKnown RBP6.72□□□□□ -1.33
CLK1-202ENST00000409403 HNRNPLLQ8WVV9 542 aaKnown RBP6.72□□□□□ -1.33
CLK1-202ENST00000409403 TRIM55Q9BYV6 548 aa6.72□□□□□ -1.33
CLK1-202ENST00000409403 UPF2Q9HAU5 1272 aaKnown RBP6.72□□□□□ -1.33
CLK1-202ENST00000409403 CRIM1Q9NZV1 1036 aa6.72□□□□□ -1.33
CLK1-202ENST00000409403 REV1Q9UBZ9 1251 aa6.72□□□□□ -1.33
CLK1-202ENST00000409403 PPP1R9AQ9ULJ8 1098 aa6.72□□□□□ -1.33
CLK1-202ENST00000409403 RGPD8O14715 1765 aaPredicted RBP6.72□□□□□ -1.33
CLK1-202ENST00000409403 METP08581 1390 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms