RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 YEATS4O95619 227 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 TRIM29Q14134 588 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 GIMAP6Q6P9H5 292 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 NFXL1Q6ZNB6 911 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 GADL1Q6ZQY3 521 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 MFSD6Q6ZSS7 791 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 MAPKAPK5Q8IW41 473 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 ZFPM1Q8IX07 1006 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 IFNL3Q8IZI9 196 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 KCNG4Q8TDN1 519 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 FAM151AQ8WW52 585 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 GDF15Q99988 308 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 DACT1Q9NYF0 836 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 RTEL1Q9NZ71 1219 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 USP25Q9UHP3 1055 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 KCNH4Q9UQ05 1017 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 SLC4A4Q9Y6R1 1079 aa14.87□□□□□ -0.03
SMARCB1-203ENST00000407082 A0A1W2PQ27 194 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 A0A1W2PQ64 194 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 A0A1W2PQD8 194 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 CCDC69A6NI79 296 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 SH2B2O14492 632 aaPredicted RBP14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 FOXP2O15409 715 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 PRKAB2O43741 272 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 NPM3O75607 178 aaKnown RBP14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 BCRP11274 1271 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 METAP2P50579 478 aaKnown RBP eCLIP14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 COL9A3Q14050 684 aaPredicted RBP14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 SF3A1Q15459 793 aaKnown RBP14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 AKNAD1Q5T1N1 836 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 GPR153Q6NV75 609 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 SGMS1Q86VZ5 419 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 ZSCAN29Q8IWY8 852 aaPredicted RBP14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 FBXO18Q8NFZ0 1043 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 SDR42E1Q8WUS8 393 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 MTMR10Q9NXD2 777 aa14.86□□□□□ -0.03
SMARCB1-203ENST00000407082 ZBTB43O43298 467 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 KINO60870 393 aaKnown RBP14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 LIG1P18858 919 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 BMP8BP34820 402 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 TDO2P48775 406 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 TYRO3Q06418 890 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 MOGSQ13724 837 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 GPAT2Q6NUI2 795 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 CHST3Q7LGC8 479 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 STAG1Q8WVM7 1258 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 UBE2OQ9C0C9 1292 aaKnown RBP14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 OSBPL5Q9H0X9 879 aaPredicted RBP14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 FLT1P17948 1338 aa14.85□□□□□ -0.03
SMARCB1-203ENST00000407082 MAGEA10P43363 369 aaPredicted RBP14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 TERF1P54274 439 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 ANTXR2P58335 489 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 STK38Q15208 465 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 TMEM67Q5HYA8 995 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 ADALQ6DHV7 355 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 FAM173BQ6P4H8 233 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 CCAR1Q8IX12 1150 aaKnown RBP14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 PXYLP1Q8TE99 480 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 SMCR8Q8TEV9 937 aaPredicted RBP14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 COA7Q96BR5 231 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 NCOA5Q9HCD5 579 aaKnown RBP14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 DCP1AQ9NPI6 582 aaPredicted RBP14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 ATP8A2Q9NTI2 1148 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 POLR3EQ9NVU0 708 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 SAP30BPQ9UHR5 308 aaKnown RBP14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 ZHX2Q9Y6X8 837 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 STK36Q9NRP7 1315 aa14.84□□□□□ -0.03
SMARCB1-203ENST00000407082 DDTLA6NHG4 134 aaPredicted RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 GSG1L2A8MUP6 293 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 CXCL11O14625 94 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 IFIT3O14879 490 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 ADCY5O95622 1261 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 ADD1P35611 737 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 ME1P48163 572 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 FAM160A1Q05DH4 1040 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 SSRP1Q08945 709 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 GNL2Q13823 731 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 ZRSR1Q15695 479 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 TPRNQ4KMQ1 711 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 SH3BP5LQ7L8J4 393 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 FASTKD5Q7L8L6 764 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 TRIM22Q8IYM9 498 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 TDHQ8IZJ6 230 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 PGBD1Q96JS3 809 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 NAT10Q9H0A0 1025 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 CRISPLD2Q9H0B8 497 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 DHX36Q9H2U1 1008 aaKnown RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 PAK6Q9NQU5 681 aaPredicted RBP14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 PICK1Q9NRD5 415 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 MCM9Q9NXL9 1143 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 ZNF112Q9UJU3 913 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 SLC12A7Q9Y666 1083 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 NID2Q14112 1375 aa14.83□□□□□ -0.04
SMARCB1-203ENST00000407082 GOLGA8AA7E2F4 631 aa14.82□□□□□ -0.04
SMARCB1-203ENST00000407082 POLR3DP05423 398 aaPredicted RBP14.82□□□□□ -0.04
SMARCB1-203ENST00000407082 FDPSP14324 419 aaKnown RBP14.82□□□□□ -0.04
SMARCB1-203ENST00000407082 CAPN2P17655 700 aa14.82□□□□□ -0.04
SMARCB1-203ENST00000407082 IRF5Q13568 498 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms