RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 TUBB2AQ13885 445 aa11.96□□□□□ -0.49
CCDC40-204ENST00000397545 IFT20Q8IY31 132 aa11.96□□□□□ -0.49
CCDC40-204ENST00000397545 TGFBRAP1Q8WUH2 860 aa11.96□□□□□ -0.49
CCDC40-204ENST00000397545 TUBB2BQ9BVA1 445 aa11.96□□□□□ -0.49
CCDC40-204ENST00000397545 MTRF1LQ9UGC7 380 aaKnown RBP11.96□□□□□ -0.49
CCDC40-204ENST00000397545 RTCBQ9Y3I0 505 aaKnown RBP11.96□□□□□ -0.49
CCDC40-204ENST00000397545 EPN1Q9Y6I3 576 aaPredicted RBP11.96□□□□□ -0.49
CCDC40-204ENST00000397545 M0R2C6 588 aa11.96□□□□□ -0.5
CCDC40-204ENST00000397545 CASP7P55210 303 aa11.96□□□□□ -0.5
CCDC40-204ENST00000397545 TOB2Q14106 344 aaPredicted RBP11.96□□□□□ -0.5
CCDC40-204ENST00000397545 SPATA1Q5VX52 437 aa11.96□□□□□ -0.5
CCDC40-204ENST00000397545 GBP6Q6ZN66 633 aa11.96□□□□□ -0.5
CCDC40-204ENST00000397545 BIN2Q9UBW5 565 aaPredicted RBP11.96□□□□□ -0.5
CCDC40-204ENST00000397545 STX10O60499 249 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 PRPHP41219 470 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 KIF23Q02241 960 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-204ENST00000397545 RDH13Q8NBN7 331 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 RASGRP4Q8TDF6 673 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 NUP58Q9BVL2 599 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 PUS7LQ9H0K6 701 aaKnown RBP11.95□□□□□ -0.5
CCDC40-204ENST00000397545 VEZTQ9HBM0 779 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 PPANQ9NQ55 473 aaKnown RBP11.95□□□□□ -0.5
CCDC40-204ENST00000397545 SAMD15Q9P1V8 674 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 HSPA1LP34931 641 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 TECP42680 631 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 ASIC2Q16515 512 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 HLFQ16534 295 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 PNMA8AQ86V59 439 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-204ENST00000397545 CCDC26Q8TAB7 109 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 CABS1Q96KC9 395 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 KIF1AQ12756 1690 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 TRPM3Q9HCF6 1732 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-204ENST00000397545 PRKAB2O43741 272 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 PLCG2P16885 1265 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 TNFAIP3P21580 790 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 CTSWP56202 376 aa11.95□□□□□ -0.5
CCDC40-204ENST00000397545 IQCGQ9H095 443 aaKnown RBP11.95□□□□□ -0.5
CCDC40-204ENST00000397545 UFL1O94874 794 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 MXRA7P84157 204 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 LONRF2Q1L5Z9 754 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CCDC144BQ3MJ40 725 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 NCAPH2Q6IBW4 605 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 KSR1Q8IVT5 923 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 ANKRD2Q9GZV1 360 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 SLC39A2Q9NP94 309 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 ZNF609O15014 1411 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CLCN6P51797 869 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 GYS2P54840 703 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 NCBP1Q09161 790 aaKnown RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 ZYXQ15942 572 aaKnown RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 KRT71Q3SY84 523 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CCDC84Q86UT8 332 aaPredicted RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CERKQ8TCT0 537 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 POLR3EQ9NVU0 708 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 PCDHB13Q9Y5F0 798 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CPDO75976 1380 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 SMCO2A6NFE2 343 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 EPB41P11171 864 aaKnown RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 LIG3P49916 1009 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 IRX5P78411 483 aaPredicted RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 NAA25Q14CX7 972 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 RPS6KA1Q15418 735 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CALCRLQ16602 461 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CFAP221Q4G0U5 840 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 KCTD16Q68DU8 428 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 B4GALNT4Q76KP1 1039 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 ADAT2Q7Z6V5 191 aaKnown RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 ACRBPQ8NEB7 543 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 BCAS4Q8TDM0 211 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 SPTLC3Q9NUV7 552 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CDC23Q9UJX2 597 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 CAMTA1Q9Y6Y1 1673 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 MED23Q9ULK4 1368 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 ANKRD65E5RJM6 399 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 HARSP12081 509 aaKnown RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 GNGT1P63211 74 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 PARP10Q53GL7 1025 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 REXO1Q8N1G1 1221 aaKnown RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 UHMK1Q8TAS1 419 aaKnown RBP11.94□□□□□ -0.5
CCDC40-204ENST00000397545 NYXQ9GZU5 481 aa11.94□□□□□ -0.5
CCDC40-204ENST00000397545 SOWAHDA6NJG2 315 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 SNAP23O00161 211 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 PPFIA1Q13136 1202 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 ZSCAN10Q96SZ4 725 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-204ENST00000397545 ZBTB1Q9Y2K1 713 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 E7EVH7 732 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 PDE8BO95263 885 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 ABCB4P21439 1286 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 RBL2Q08999 1139 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 WHAMMP3Q1A5X7 153 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 BLIDQ8IZY5 108 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 FNBP4Q8N3X1 1017 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-204ENST00000397545 TTC16Q8NEE8 873 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 RABGGTAQ92696 567 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 MTUS1Q9ULD2 1270 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 SOS2Q07890 1332 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-204ENST00000397545 USP27XA6NNY8 438 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 IRX3P78415 501 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-204ENST00000397545 PAK2Q13177 524 aa11.93□□□□□ -0.5
CCDC40-204ENST00000397545 PPP2R5BQ15173 497 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms