RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 IGKV6D-41A0A0C4DH26 115 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 TRIM43BA6NCK2 446 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 POTEB2H3BUK9 544 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 RNF113AO15541 343 aaKnown RBP12.32□□□□□ -0.44
NEDD8-202ENST00000396828 GPAA1O43292 621 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 SLC25A27O95847 323 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 NDUFB10O96000 172 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 PGK1P00558 417 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 ZNF865P0CJ78 1059 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-202ENST00000396828 PDE4AP27815 886 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 SNX17Q15036 470 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 C9orf50Q5SZB4 431 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 APPBP2Q92624 585 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 TRIM43Q96BQ3 446 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-202ENST00000396828 DDRGK1Q96HY6 314 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 TINF2Q9BSI4 451 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 MYH4Q9Y623 1939 aa12.32□□□□□ -0.44
NEDD8-202ENST00000396828 ROBO3Q96MS0 1386 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 KBTBD13C9JR72 458 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 DLL1O00548 723 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 SNAI1O95863 264 aaPredicted RBP12.31□□□□□ -0.44
NEDD8-202ENST00000396828 IRX5P78411 483 aaPredicted RBP12.31□□□□□ -0.44
NEDD8-202ENST00000396828 SHHQ15465 462 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 SKAP1Q86WV1 359 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 BADQ92934 168 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 GPATCH3Q96I76 525 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 FAM161BQ96MY7 647 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 GUCD1Q96NT3 240 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 LBHD1Q9BQE6 289 aaPredicted RBP12.31□□□□□ -0.44
NEDD8-202ENST00000396828 SLF1Q9BQI6 1058 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 MKNK2Q9HBH9 465 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 PRDM5Q9NQX1 630 aaPredicted RBP12.31□□□□□ -0.44
NEDD8-202ENST00000396828 PDLIM7Q9NR12 457 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 SLC5A4Q9NY91 659 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 CLIP2Q9UDT6 1046 aa12.31□□□□□ -0.44
NEDD8-202ENST00000396828 CHD9Q3L8U1 2897 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 ADCY6O43306 1168 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 MX1P20591 662 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 SLC4A3P48751 1232 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 TLE2Q04725 743 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 KCTD2Q14681 263 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 SNRNP48Q6IEG0 339 aaKnown RBP12.3□□□□□ -0.44
NEDD8-202ENST00000396828 GIMAP6Q6P9H5 292 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 IFNL3Q8IZI9 196 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 PI4K2BQ8TCG2 481 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 CHMP4CQ96CF2 233 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 CEP95Q96GE4 821 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 FGD4Q96M96 766 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 XPNPEP3Q9NQH7 507 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 INCENPQ9NQS7 918 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 NYAP2Q9P242 653 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 STXBP5LQ9Y2K9 1186 aa12.3□□□□□ -0.44
NEDD8-202ENST00000396828 DNAJC25-GNG10A0A024R161 153 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 MYADML2A6NDP7 307 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 FOXP2O15409 715 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 ADAMTS4O75173 837 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 APPP05067 770 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 TDO2P48775 406 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 EPHB4P54760 987 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 PLEKHM2Q8IWE5 1019 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 CPXCR1Q8N123 301 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 LRRC47Q8N1G4 583 aaKnown RBP12.29□□□□□ -0.44
NEDD8-202ENST00000396828 MKL1Q969V6 931 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 KIFC2Q96AC6 838 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 RAVER2Q9HCJ3 691 aaKnown RBP12.29□□□□□ -0.44
NEDD8-202ENST00000396828 MTMR4Q9NYA4 1195 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 PRKAG2Q9UGJ0 569 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 PHF24Q9UPV7 400 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 DIS3Q9Y2L1 958 aaKnown RBP12.29□□□□□ -0.44
NEDD8-202ENST00000396828 TACC3Q9Y6A5 838 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 MCM3APO60318 1980 aa12.29□□□□□ -0.44
NEDD8-202ENST00000396828 A0A1W2PQ45 241 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-202ENST00000396828 A0A1W2PQY0 241 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 PATL2C9JE40 543 aaKnown RBP12.28□□□□□ -0.44
NEDD8-202ENST00000396828 RARBP10826 455 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 PDE1AP54750 535 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 C1orf53Q5VUE5 145 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 RASGRP2Q7LDG7 609 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 ZNF444Q8N0Y2 327 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-202ENST00000396828 PRPF38AQ8NAV1 312 aaKnown RBP12.28□□□□□ -0.44
NEDD8-202ENST00000396828 TEX13BQ9BXU2 312 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 OSBPL3Q9H4L5 887 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 NRBP1Q9UHY1 535 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 TTC41PQ6P2S7 1318 aa12.28□□□□□ -0.44
NEDD8-202ENST00000396828 ERC2O15083 957 aa12.27□□□□□ -0.45
NEDD8-202ENST00000396828 ZFYP08048 801 aaPredicted RBP12.27□□□□□ -0.45
NEDD8-202ENST00000396828 CCSAPQ6IQ19 270 aaPredicted RBP12.27□□□□□ -0.45
NEDD8-202ENST00000396828 MAMDC4Q6UXC1 1216 aa12.27□□□□□ -0.45
NEDD8-202ENST00000396828 CCDC129Q6ZRS4 1044 aa12.27□□□□□ -0.45
NEDD8-202ENST00000396828 SLC38A10Q9HBR0 1119 aa12.27□□□□□ -0.45
NEDD8-202ENST00000396828 DDX49Q9Y6V7 483 aaKnown RBP12.27□□□□□ -0.45
NEDD8-202ENST00000396828 SYNRGQ9UMZ2 1314 aa12.27□□□□□ -0.45
NEDD8-202ENST00000396828 MUC3AQ02505 3323 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 REV3LO60673 3130 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 ATP2A1O14983 1001 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 NMT2O60551 498 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 PQBP1O60828 265 aaKnown RBP12.26□□□□□ -0.45
NEDD8-202ENST00000396828 AKR1A1P14550 325 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 GNAT2P19087 354 aa12.26□□□□□ -0.45
NEDD8-202ENST00000396828 PTGS1P23219 599 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms