RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 EXOC7Q9UPT5 735 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 CMA1P23946 247 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 GABPAQ06546 454 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 ZMYM4Q5VZL5 1548 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 hCG_2014768A0A024R1R8 64 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 TADA3O75528 432 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 SLC8A3P57103 927 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 SLC7A5Q01650 507 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 TNNI3KQ59H18 835 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 BAG5Q9UL15 447 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 FPGT-TNNI3KV9GXZ4 949 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 XRCC5P13010 732 aaKnown RBP12.97□□□□□ -0.33
SYNPO-202ENST00000394243 NUDCD3Q8IVD9 361 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 RSBN1LQ6PCB5 846 aaPredicted RBP12.97□□□□□ -0.33
SYNPO-202ENST00000394243 ARHGEF18Q6ZSZ5 1173 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 OGFOD1Q8N543 542 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 TM6SF1Q9BZW5 370 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 GSTA1P08263 222 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 GSTA2P09210 222 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 MSH2P43246 934 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 SLCO1A2P46721 670 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 COPB1P53618 953 aaKnown RBP12.96□□□□□ -0.33
SYNPO-202ENST00000394243 TCP11X2Q5H9J9 407 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 ANKFY1Q9P2R3 1169 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 ZBTB22O15209 634 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 COBLO75128 1261 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 TRIML2Q8N7C3 387 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 TRIML1Q8N9V2 468 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 CLIC6Q96NY7 704 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 NOS1P29475 1434 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 EIF4E1BA6NMX2 242 aaKnown RBP12.96□□□□□ -0.33
SYNPO-202ENST00000394243 FOXO3O43524 673 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 MTHFSDQ2M296 383 aaKnown RBP12.96□□□□□ -0.33
SYNPO-202ENST00000394243 CCDC92Q53HC0 331 aaPredicted RBP12.96□□□□□ -0.33
SYNPO-202ENST00000394243 C11orf57Q6ZUT1 292 aaPredicted RBP12.96□□□□□ -0.33
SYNPO-202ENST00000394243 MAGOHBQ96A72 148 aaKnown RBP12.96□□□□□ -0.33
SYNPO-202ENST00000394243 FAM167BQ9BTA0 163 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 SPZ1Q9BXG8 430 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 TPCN1Q9ULQ1 816 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 PHF8Q9UPP1 1060 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 CTDSPL2Q05D32 466 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 ASPHQ12797 758 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 SH3GL3Q99963 347 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 NUB1Q9Y5A7 615 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 NDUFB9Q9Y6M9 179 aa12.96□□□□□ -0.33
SYNPO-202ENST00000394243 E7EWF7 191 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 PCYT1AP49585 367 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 KAZNQ674X7 775 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 DBNDD2Q9BQY9 259 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 SAP30BPQ9UHR5 308 aaKnown RBP12.96□□□□□ -0.34
SYNPO-202ENST00000394243 JAG2Q9Y219 1238 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 CD19P15391 556 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 SAT1P21673 171 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 PLTPP55058 493 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 STRN3Q13033 797 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 DYNC1I2Q13409 638 aaKnown RBP12.96□□□□□ -0.34
SYNPO-202ENST00000394243 NONOQ15233 471 aaKnown RBP eCLIP12.96□□□□□ -0.34
SYNPO-202ENST00000394243 NBPF5PQ86XG9 351 aaPredicted RBP12.96□□□□□ -0.34
SYNPO-202ENST00000394243 APPBP2Q92624 585 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 SUFUQ9UMX1 484 aa12.96□□□□□ -0.34
SYNPO-202ENST00000394243 MAPKBP1O60336 1514 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 EPRSP07814 1512 aaKnown RBP12.95□□□□□ -0.34
SYNPO-202ENST00000394243 H0Y3Z8 333 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 GSPT1P15170 499 aaKnown RBP12.95□□□□□ -0.34
SYNPO-202ENST00000394243 TMED2Q15363 201 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 PHACTR3Q96KR7 559 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 PALD1Q9ULE6 856 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 PDE6BP35913 854 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 DHX9Q08211 1270 aaKnown RBP12.95□□□□□ -0.34
SYNPO-202ENST00000394243 SLMAPQ14BN4 828 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 C16orf87Q6PH81 154 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 ANKRD35Q8N283 1001 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 BBOF1Q8ND07 529 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 TBK1Q9UHD2 729 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 DAAM1Q9Y4D1 1078 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 CLIC4Q9Y696 253 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 SOWAHDA6NJG2 315 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 INHBAP08476 426 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 PDCLQ13371 301 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 GRAMD1BQ3KR37 738 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 KCNV2Q8TDN2 545 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 PIK3R5Q8WYR1 880 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 A0A087WWV3 80 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 H2AFZP0C0S5 128 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 KRT10P13645 584 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 CNGA1P29973 690 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 EIF4A2Q14240 407 aaKnown RBP12.95□□□□□ -0.34
SYNPO-202ENST00000394243 H2AFVQ71UI9 128 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 ELAC2Q9BQ52 826 aaKnown RBP12.95□□□□□ -0.34
SYNPO-202ENST00000394243 TUBB6Q9BUF5 446 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 ZNF148Q9UQR1 794 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 ACRBPQ8NEB7 543 aa12.95□□□□□ -0.34
SYNPO-202ENST00000394243 PNMA6EA0A0J9YXQ4 647 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 IWS1Q96ST2 819 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 ACEP12821 1306 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 KRT25Q7Z3Z0 450 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 CCDC125Q86Z20 511 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 MYOCDQ8IZQ8 938 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 HNRNPCP07910 306 aaKnown RBP eCLIP12.94□□□□□ -0.34
SYNPO-202ENST00000394243 ESRRAP11474 423 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms