RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CUEDC2Q9H467 287 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 ZSWIM4Q9H7M6 989 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CCDC87Q9NVE4 849 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 TMEM51Q9NW97 253 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 TAB2Q9NYJ8 693 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 MKRN1Q9UHC7 482 aaKnown RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 ANO9A1A5B4 782 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 NTSR2O95665 410 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CASP1P29466 404 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 HOXA7P31268 230 aaPredicted RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 LMAN1P49257 510 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 USP14P54578 494 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 VSNL1P62760 191 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 MCM6Q14566 821 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 MEA1Q16626 185 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CCDC178Q5BJE1 867 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CAVIN4Q5BKX8 364 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CTR9Q6PD62 1173 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 PIK3AP1Q6ZUJ8 805 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CCDC170Q8IYT3 715 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 SRBD1Q8N5C6 995 aaKnown RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 ZNF507Q8TCN5 953 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 DHTKD1Q96HY7 919 aaPredicted RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 MTRQ99707 1265 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CCSER1Q9C0I3 900 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 ATP8A2Q9NTI2 1148 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 COL14A1Q05707 1796 aaKnown RBP11.23□□□□□ -0.61
COL17A1-203ENST00000393211 SCN7AQ01118 1682 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 A0A0U1RQJ8 604 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 SNAP23O00161 211 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 WNT7AO00755 349 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 PSMA7O14818 248 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 KRT86O43790 486 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 RHOBTB3O94955 611 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 CAMTA2O94983 1202 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 CYLC1P35663 651 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-203ENST00000393211 PRPHP41219 470 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 STAT6P42226 847 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 PRCPP42785 496 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 GNAQP50148 359 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 CDK17Q00537 523 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 IL17AQ16552 155 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 IQCEQ6IPM2 695 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 POTEDQ86YR6 584 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 IRF2BP1Q8IU81 584 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 FAM114A1Q8IWE2 563 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 BLIDQ8IZY5 108 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 DAGLBQ8NCG7 672 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 ATRIPQ8WXE1 791 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 ANKS1AQ92625 1134 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 CCDC47Q96A33 483 aaKnown RBP11.23□□□□□ -0.61
COL17A1-203ENST00000393211 SLF1Q9BQI6 1058 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 CRNKL1Q9BZJ0 848 aaKnown RBP11.23□□□□□ -0.61
COL17A1-203ENST00000393211 BLZF1Q9H2G9 400 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 DISC1Q9NRI5 854 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 VPS18Q9P253 973 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 MAGEC2Q9UBF1 373 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-203ENST00000393211 ARPP21Q9UBL0 812 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-203ENST00000393211 ABCF2Q9UG63 623 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 SAR1BQ9Y6B6 198 aa11.23□□□□□ -0.61
COL17A1-203ENST00000393211 STRCQ7RTU9 1775 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 TTC26A0AVF1 554 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 BICDL2A1A5D9 508 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 RNF225M0QZC1 329 aaPredicted RBP11.22□□□□□ -0.61
COL17A1-203ENST00000393211 EXOC5O00471 708 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 RGL2O15211 777 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 RHOXF2BP0C7M4 288 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 SRGNP10124 158 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 CAPN2P17655 700 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 MCM7P33993 719 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 COBLL1Q53SF7 1204 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 FIGNQ5HY92 759 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 INTS5Q6P9B9 1019 aaKnown RBP11.22□□□□□ -0.61
COL17A1-203ENST00000393211 GIMAP8Q8ND71 665 aaPredicted RBP11.22□□□□□ -0.61
COL17A1-203ENST00000393211 RHOXF2Q9BQY4 288 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 TSGA10Q9BZW7 698 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 BSDC1Q9NW68 430 aaPredicted RBP11.22□□□□□ -0.61
COL17A1-203ENST00000393211 ZNHIT6Q9NWK9 470 aaKnown RBP11.22□□□□□ -0.61
COL17A1-203ENST00000393211 PCDHA4Q9UN74 947 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 REXO2Q9Y3B8 237 aaKnown RBP11.22□□□□□ -0.61
COL17A1-203ENST00000393211 MAST2Q6P0Q8 1798 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 WNK3Q9BYP7 1800 aa11.22□□□□□ -0.61
COL17A1-203ENST00000393211 BAZ2AQ9UIF9 1905 aaKnown RBP11.21□□□□□ -0.61
COL17A1-203ENST00000393211 A0A1W2PQJ5 194 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 EIF3CLB5ME19 914 aaKnown RBP11.21□□□□□ -0.61
COL17A1-203ENST00000393211 USP17L12C9JPN9 530 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 USP17L21D6R901 530 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 IPO7O95373 1038 aaKnown RBP11.21□□□□□ -0.61
COL17A1-203ENST00000393211 ITIH3Q06033 890 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 SF3B3Q15393 1217 aaKnown RBP11.21□□□□□ -0.61
COL17A1-203ENST00000393211 DTHD1Q6ZMT9 781 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 DGKHQ86XP1 1220 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 ANKRD18AQ8IVF6 992 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 GOLGA6L1Q8N7Z2 621 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 AK8Q96MA6 479 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 EIF3CQ99613 913 aaKnown RBP11.21□□□□□ -0.61
COL17A1-203ENST00000393211 KBTBD4Q9NVX7 518 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 FEZ2Q9UHY8 353 aaPredicted RBP11.21□□□□□ -0.61
COL17A1-203ENST00000393211 ZNF652Q9Y2D9 606 aa11.21□□□□□ -0.61
COL17A1-203ENST00000393211 hCG_1642624A0A1W2PR95 340 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms