RNA–Protein interactions for RNA: ENST00000390009.7

ACTN4-202, Transcript of actinin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene ACTN4, Length 2,102 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-202ENST00000390009 DHX58Q96C10 678 aa20.72■□□□□ 0.91
ACTN4-202ENST00000390009 DNAJC18Q9H819 358 aa20.72■□□□□ 0.91
ACTN4-202ENST00000390009 DDTLA6NHG4 134 aaPredicted RBP20.72■□□□□ 0.91
ACTN4-202ENST00000390009 IKBKBO14920 756 aa20.72■□□□□ 0.91
ACTN4-202ENST00000390009 PTGS1P23219 599 aa20.72■□□□□ 0.91
ACTN4-202ENST00000390009 CCDC186Q7Z3E2 898 aa20.72■□□□□ 0.91
ACTN4-202ENST00000390009 GRAMD1CQ8IYS0 662 aa20.72■□□□□ 0.91
ACTN4-202ENST00000390009 NRBP1Q9UHY1 535 aa20.72■□□□□ 0.91
ACTN4-202ENST00000390009 ARL6IP4Q66PJ3 421 aaKnown RBP20.71■□□□□ 0.91
ACTN4-202ENST00000390009 TTLL6Q8N841 843 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 C4orf32Q8N8J7 132 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 CCDC17Q96LX7 622 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 MAN1B1Q9UKM7 699 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 NPM3O75607 178 aaKnown RBP20.71■□□□□ 0.91
ACTN4-202ENST00000390009 BMP6P22004 513 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 SARSP49591 514 aaKnown RBP20.71■□□□□ 0.91
ACTN4-202ENST00000390009 TPM4P67936 248 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 IL17AQ16552 155 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 INF2Q27J81 1249 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 SMARCE1Q969G3 411 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 CCDC34Q96HJ3 373 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 C6orf50Q9HD87 102 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 PI4KBQ9UBF8 816 aa20.71■□□□□ 0.91
ACTN4-202ENST00000390009 SMCO2A6NFE2 343 aa20.7■□□□□ 0.9
ACTN4-202ENST00000390009 SLFN14P0C7P3 912 aa20.7■□□□□ 0.9
ACTN4-202ENST00000390009 GNA11P29992 359 aa20.7■□□□□ 0.9
ACTN4-202ENST00000390009 GRIPAP1Q4V328 841 aa20.7■□□□□ 0.9
ACTN4-202ENST00000390009 SH3BP5LQ7L8J4 393 aa20.7■□□□□ 0.9
ACTN4-202ENST00000390009 ZSCAN29Q8IWY8 852 aaPredicted RBP20.7■□□□□ 0.9
ACTN4-202ENST00000390009 FAM196BA6NMK8 535 aa20.69■□□□□ 0.9
ACTN4-202ENST00000390009 OFD1O75665 1012 aa20.69■□□□□ 0.9
ACTN4-202ENST00000390009 ZNF543Q08ER8 600 aa20.69■□□□□ 0.9
ACTN4-202ENST00000390009 CCDC93Q567U6 631 aa20.69■□□□□ 0.9
ACTN4-202ENST00000390009 SOGA3Q5TF21 947 aa20.69■□□□□ 0.9
ACTN4-202ENST00000390009 SPATA20Q8TB22 786 aa20.69■□□□□ 0.9
ACTN4-202ENST00000390009 TDRD3Q9H7E2 651 aaKnown RBP20.69■□□□□ 0.9
ACTN4-202ENST00000390009 GPCPD1Q9NPB8 672 aa20.69■□□□□ 0.9
ACTN4-202ENST00000390009 hCG_1984214I3L0E3 225 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 ATP2B2Q01814 1243 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 MYL5Q02045 173 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 CFAP100Q494V2 611 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 PPP4R3BQ5MIZ7 849 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 KRT25Q7Z3Z0 450 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 RTKN2Q8IZC4 609 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 ZNF713Q8N859 430 aaPredicted RBP20.68■□□□□ 0.9
ACTN4-202ENST00000390009 TRIML1Q8N9V2 468 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 LONP1P36776 959 aaKnown RBP20.68■□□□□ 0.9
ACTN4-202ENST00000390009 MORC3Q14149 939 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 CCDC144BQ3MJ40 725 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.68■□□□□ 0.9
ACTN4-202ENST00000390009 SH3RF1Q7Z6J0 888 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 HSD3B7Q9H2F3 369 aa20.68■□□□□ 0.9
ACTN4-202ENST00000390009 ESYT2A0FGR8 921 aa20.67■□□□□ 0.9
ACTN4-202ENST00000390009 LMOD1P29536 600 aaPredicted RBP20.67■□□□□ 0.9
ACTN4-202ENST00000390009 AFMP43652 599 aa20.67■□□□□ 0.9
ACTN4-202ENST00000390009 CERKLQ49MI3 558 aaPredicted RBP20.67■□□□□ 0.9
ACTN4-202ENST00000390009 PAGE5Q96GU1 130 aa20.67■□□□□ 0.9
ACTN4-202ENST00000390009 PSMD1Q99460 953 aa20.67■□□□□ 0.9
ACTN4-202ENST00000390009 TRIM34Q9BYJ4 488 aa20.67■□□□□ 0.9
ACTN4-202ENST00000390009 KIF13BQ9NQT8 1826 aa20.67■□□□□ 0.9
ACTN4-202ENST00000390009 DPEP1P16444 411 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 NONOQ15233 471 aaKnown RBP eCLIP20.66■□□□□ 0.94e-7■■□□□ 12.5
ACTN4-202ENST00000390009 PRMT6Q96LA8 375 aaPredicted RBP20.66■□□□□ 0.9
ACTN4-202ENST00000390009 PYCARDQ9ULZ3 195 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 SMC2O95347 1197 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 KCNA3P22001 575 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 E2F4Q16254 413 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 GPATCH4Q5T3I0 446 aaKnown RBP20.66■□□□□ 0.9
ACTN4-202ENST00000390009 TATDN1Q6P1N9 297 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 IQUBQ8NA54 791 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 MLKLQ8NB16 471 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 KIAA1524Q8TCG1 905 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 SLC16A10Q8TF71 515 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 PYM1Q9BRP8 204 aaKnown RBP20.66■□□□□ 0.9
ACTN4-202ENST00000390009 TMEM60Q9H2L4 133 aa20.66■□□□□ 0.9
ACTN4-202ENST00000390009 ATRNL1Q5VV63 1379 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 NOLC1Q14978 699 aaKnown RBP eCLIP20.65■□□□□ 0.9
ACTN4-202ENST00000390009 CCDC96Q2M329 555 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 SHROOM1Q2M3G4 852 aaPredicted RBP20.65■□□□□ 0.9
ACTN4-202ENST00000390009 DTHD1Q6ZMT9 781 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 ADGRF4Q8IZF3 695 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 REXO1Q8N1G1 1221 aaKnown RBP20.65■□□□□ 0.9
ACTN4-202ENST00000390009 JMJD4Q9H9V9 463 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 IFNKQ9P0W0 207 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 DACH1Q9UI36 760 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 LAD1O00515 517 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 ENTPD3O75355 529 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 LRMPQ12912 555 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 TTBK2Q6IQ55 1244 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 C17orf53Q8N3J3 647 aaPredicted RBP20.65■□□□□ 0.9
ACTN4-202ENST00000390009 COA7Q96BR5 231 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 XPO4Q9C0E2 1151 aaKnown RBP20.65■□□□□ 0.9
ACTN4-202ENST00000390009 KANSL2Q9H9L4 492 aa20.65■□□□□ 0.9
ACTN4-202ENST00000390009 EEF2P13639 858 aaKnown RBP20.64■□□□□ 0.89
ACTN4-202ENST00000390009 RSBN1LQ6PCB5 846 aaPredicted RBP20.64■□□□□ 0.89
ACTN4-202ENST00000390009 LARGE2Q8N3Y3 721 aa20.64■□□□□ 0.89
ACTN4-202ENST00000390009 BIN2Q9UBW5 565 aaPredicted RBP20.64■□□□□ 0.89
ACTN4-202ENST00000390009 COL4A5P29400 1685 aa20.64■□□□□ 0.89
ACTN4-202ENST00000390009 ARFGEF1Q9Y6D6 1849 aa20.64■□□□□ 0.89
ACTN4-202ENST00000390009 PNMA6FA0A0J9YX94 578 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms