RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 MKL1Q969V6 931 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 UBA5Q9GZZ9 404 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 VAT1LQ9HCJ6 419 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 NYAP2Q9P242 653 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 FER1L6Q2WGJ9 1857 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 ESYT2A0FGR8 921 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 SPDYE2BA6NHP3 402 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 POLR2DO15514 142 aaKnown RBP28.74■■■□□ 2.19
SHOX2-201ENST00000389589 ZBTB7AO95365 584 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 SPDYE6P0CI01 402 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 ARL6IP4Q66PJ3 421 aaKnown RBP28.74■■■□□ 2.19
SHOX2-201ENST00000389589 CCDC34Q96HJ3 373 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 MTFR1LQ9H019 292 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 RTN4Q9NQC3 1192 aaKnown RBP28.74■■■□□ 2.19
SHOX2-201ENST00000389589 TMEM179Q6ZVK1 233 aa28.73■■■□□ 2.19
SHOX2-201ENST00000389589 KRT25Q7Z3Z0 450 aa28.73■■■□□ 2.19
SHOX2-201ENST00000389589 SMCO2A6NFE2 343 aa28.72■■■□□ 2.19
SHOX2-201ENST00000389589 MSNP26038 577 aaKnown RBP28.72■■■□□ 2.19
SHOX2-201ENST00000389589 MCM7P33993 719 aa28.72■■■□□ 2.19
SHOX2-201ENST00000389589 ATP2B2Q01814 1243 aa28.72■■■□□ 2.19
SHOX2-201ENST00000389589 DLGAP5Q15398 846 aa28.72■■■□□ 2.19
SHOX2-201ENST00000389589 DHX40Q8IX18 779 aaKnown RBP28.72■■■□□ 2.19
SHOX2-201ENST00000389589 AGBL3Q8NEM8 1001 aa28.72■■■□□ 2.19
SHOX2-201ENST00000389589 RASGRP4Q8TDF6 673 aa28.72■■■□□ 2.19
SHOX2-201ENST00000389589 MDM2Q00987 491 aaPredicted RBP28.71■■■□□ 2.19
SHOX2-201ENST00000389589 PNOCQ13519 176 aa28.71■■■□□ 2.19
SHOX2-201ENST00000389589 DPCR1Q3MIW9 517 aa28.71■■■□□ 2.19
SHOX2-201ENST00000389589 DALRD3Q5D0E6 543 aaKnown RBP28.71■■■□□ 2.19
SHOX2-201ENST00000389589 GPCPD1Q9NPB8 672 aa28.71■■■□□ 2.19
SHOX2-201ENST00000389589 A0A087WWV3 80 aa28.71■■■□□ 2.19
SHOX2-201ENST00000389589 ARFGEF1Q9Y6D6 1849 aa28.71■■■□□ 2.19
SHOX2-201ENST00000389589 FAM196BA6NMK8 535 aa28.7■■■□□ 2.19
SHOX2-201ENST00000389589 SARM1Q6SZW1 724 aa28.7■■■□□ 2.19
SHOX2-201ENST00000389589 SERTAD1Q9UHV2 236 aa28.7■■■□□ 2.19
SHOX2-201ENST00000389589 VWA3AA6NCI4 1184 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 BIN1O00499 593 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 SLURP2P0DP57 97 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 CLCN1P35523 988 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 POSTNQ15063 836 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 ABCB5Q2M3G0 1257 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 DCAF4Q8WV16 495 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 SYMPKQ92797 1274 aaKnown RBP28.7■■■□□ 2.18
SHOX2-201ENST00000389589 PYM1Q9BRP8 204 aaKnown RBP28.7■■■□□ 2.18
SHOX2-201ENST00000389589 HERC5Q9UII4 1024 aaKnown RBP28.7■■■□□ 2.18
SHOX2-201ENST00000389589 ZKSCAN5Q9Y2L8 839 aa28.7■■■□□ 2.18
SHOX2-201ENST00000389589 PNMA6FA0A0J9YX94 578 aa28.69■■■□□ 2.18
SHOX2-201ENST00000389589 ACTN4O43707 911 aaKnown RBP28.69■■■□□ 2.18
SHOX2-201ENST00000389589 EEF2P13639 858 aaKnown RBP28.69■■■□□ 2.18
SHOX2-201ENST00000389589 CCDC96Q2M329 555 aa28.69■■■□□ 2.18
SHOX2-201ENST00000389589 PPP1R18Q6NYC8 613 aa28.69■■■□□ 2.18
SHOX2-201ENST00000389589 USP49Q70CQ1 688 aa28.69■■■□□ 2.18
SHOX2-201ENST00000389589 CSRNP1Q96S65 589 aa28.69■■■□□ 2.18
SHOX2-201ENST00000389589 TRIM5Q9C035 493 aa28.69■■■□□ 2.18
SHOX2-201ENST00000389589 ATF5Q9Y2D1 282 aaPredicted RBP28.69■■■□□ 2.18
SHOX2-201ENST00000389589 GOLGA6L6A8MZA4 724 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 ARHGAP30Q7Z6I6 1101 aaPredicted RBP28.68■■■□□ 2.18
SHOX2-201ENST00000389589 C4orf32Q8N8J7 132 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 MTMR14Q8NCE2 650 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 ZNF70Q9UC06 446 aaPredicted RBP28.68■■■□□ 2.18
SHOX2-201ENST00000389589 LAD1O00515 517 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 NONOQ15233 471 aaKnown RBP eCLIP28.68■■■□□ 2.18
SHOX2-201ENST00000389589 PLA2G4DQ86XP0 818 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 ADGRF4Q8IZF3 695 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 AOPEPQ8N6M6 819 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 FAM151AQ8WW52 585 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 EPSTI1Q96J88 318 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 JMJD4Q9H9V9 463 aa28.68■■■□□ 2.18
SHOX2-201ENST00000389589 TPM3P06753 285 aa28.67■■■□□ 2.18
SHOX2-201ENST00000389589 LONP1P36776 959 aaKnown RBP28.67■■■□□ 2.18
SHOX2-201ENST00000389589 ZNF75DP51815 510 aa28.67■■■□□ 2.18
SHOX2-201ENST00000389589 INF2Q27J81 1249 aa28.67■■■□□ 2.18
SHOX2-201ENST00000389589 FKBP1CQ5VVH2 108 aa28.67■■■□□ 2.18
SHOX2-201ENST00000389589 PDILTQ8N807 584 aa28.67■■■□□ 2.18
SHOX2-201ENST00000389589 PCDHA5Q9Y5H7 936 aa28.67■■■□□ 2.18
SHOX2-201ENST00000389589 SMTNL1A8MU46 457 aa28.66■■■□□ 2.18
SHOX2-201ENST00000389589 ICA1Q05084 483 aa28.66■■■□□ 2.18
SHOX2-201ENST00000389589 SEPT2Q15019 361 aa28.66■■■□□ 2.18
SHOX2-201ENST00000389589 SPDYE2Q495Y8 402 aa28.66■■■□□ 2.18
SHOX2-201ENST00000389589 RBM26Q5T8P6 1007 aaKnown RBP28.66■■■□□ 2.18
SHOX2-201ENST00000389589 NT5DC1Q5TFE4 455 aa28.66■■■□□ 2.18
SHOX2-201ENST00000389589 SLFN14P0C7P3 912 aa28.66■■■□□ 2.18
SHOX2-201ENST00000389589 REXO1Q8N1G1 1221 aaKnown RBP28.66■■■□□ 2.18
SHOX2-201ENST00000389589 TAOK3Q9H2K8 898 aa28.66■■■□□ 2.18
SHOX2-201ENST00000389589 ZBTB12Q9Y330 459 aaPredicted RBP28.66■■■□□ 2.18
SHOX2-201ENST00000389589 TCP10L2B9ZVM9 353 aa28.65■■■□□ 2.18
SHOX2-201ENST00000389589 MTMR8Q96EF0 704 aa28.65■■■□□ 2.18
SHOX2-201ENST00000389589 ADCY7P51828 1080 aa28.65■■■□□ 2.18
SHOX2-201ENST00000389589 TPM4P67936 248 aa28.65■■■□□ 2.18
SHOX2-201ENST00000389589 ORC2Q13416 577 aaPredicted RBP28.65■■■□□ 2.18
SHOX2-201ENST00000389589 SLFN13Q68D06 897 aa28.65■■■□□ 2.18
SHOX2-201ENST00000389589 DHX58Q96C10 678 aa28.65■■■□□ 2.18
SHOX2-201ENST00000389589 TTBK2Q6IQ55 1244 aa28.64■■■□□ 2.18
SHOX2-201ENST00000389589 TRIML1Q8N9V2 468 aa28.64■■■□□ 2.18
SHOX2-201ENST00000389589 GMCL1P1Q8NEA9 526 aa28.64■■■□□ 2.18
SHOX2-201ENST00000389589 SMARCE1Q969G3 411 aa28.64■■■□□ 2.18
SHOX2-201ENST00000389589 SYNPO2Q9UMS6 1093 aa28.64■■■□□ 2.18
SHOX2-201ENST00000389589 CLRN2A0PK11 232 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 IKBKBO14920 756 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 ZBTB5O15062 677 aa28.63■■■□□ 2.17
SHOX2-201ENST00000389589 FOXN1O15353 648 aa28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms