RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PDE6BP35913 854 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 PCBP3P57721 371 aaKnown RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 DCAF15Q66K64 600 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 CEP128Q6ZU80 1094 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 LRRC56Q8IYG6 542 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 ZNF655Q8N720 491 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 KCNN1Q92952 543 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 FERD3LQ96RJ6 166 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 MCOLN1Q9GZU1 580 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 YBX2Q9Y2T7 364 aaKnown RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 SSU72P8A0A1W2PR75 194 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 NFIBO00712 420 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 TP53P04637 393 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 DUSP4Q13115 394 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 AUHQ13825 339 aaKnown RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 NR0B2Q15466 257 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 ADGRF1Q5T601 910 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 RNF111Q6ZNA4 994 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 ENOX1Q8TC92 643 aaKnown RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 RNF34Q969K3 372 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 MAP6Q96JE9 813 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 DDX41Q9UJV9 622 aaKnown RBP3.86□□□□□ -1.79
VPS13A-206ENST00000376646 TMEM253P0C7T8 217 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 CEBPAP49715 358 aaPredicted RBP3.85□□□□□ -1.79
VPS13A-206ENST00000376646 ANKLE2Q86XL3 938 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 LILRA2Q8N149 483 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 ANKS4BQ8N8V4 417 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 LINC00116Q8NCU8 138 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 BRF1Q92994 677 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 PPP1R16BQ96T49 567 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 CDADC1Q9BWV3 514 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 BCL11AQ9H165 835 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 CD320Q9NPF0 282 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 PCDHB12Q9Y5F1 795 aa3.85□□□□□ -1.79
VPS13A-206ENST00000376646 CHRNEQ04844 493 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 RAD51AP2Q09MP3 1159 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 TRIM26Q12899 539 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 PAK2Q13177 524 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 SLC14A2Q15849 920 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 LRRFIP1Q32MZ4 808 aaKnown RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 AXDND1Q5T1B0 1012 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 NLRX1Q86UT6 975 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 METTL16Q86W50 562 aaKnown RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 SPPL2CQ8IUH8 684 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 CCDC144CPQ8IYA2 1237 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 BHLHE22Q8NFJ8 381 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 SLC6A17Q9H1V8 727 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 GINM1Q9NU53 330 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 AP5S1Q9NUS5 200 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 SUCOQ9UBS9 1254 aaKnown RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 SMG5Q9UPR3 1016 aaKnown RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 GPR55Q9Y2T6 319 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 CCNFP41002 786 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 RTP1P59025 263 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 KCNA10Q16322 511 aa3.84□□□□□ -1.79
VPS13A-206ENST00000376646 CWC22Q9HCG8 908 aaKnown RBP3.84□□□□□ -1.79
VPS13A-206ENST00000376646 TCAF2A6NFQ2 919 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 H0Y8X5 98 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 ZSCAN22P10073 491 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-206ENST00000376646 UNC5AQ6ZN44 842 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 TOX2Q96NM4 488 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 DSCC1Q9BVC3 393 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 METTL5Q9NRN9 209 aaKnown RBP3.83□□□□□ -1.8
VPS13A-206ENST00000376646 ERVK13-1Q9NX77 482 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 PCDHB10Q9UN67 800 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 EFR3BQ9Y2G0 817 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 LTBP3Q9NS15 1303 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 UNCXA6NJT0 531 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 NRDCO43847 1150 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 VAV1P15498 845 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 DLG4P78352 724 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 RTP2Q5QGT7 225 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 TMEM132EQ6IEE7 984 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 IRF2BP1Q8IU81 584 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 C7orf61Q8IZ16 206 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 TMEM52Q8NDY8 209 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 SLC26A8Q96RN1 970 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 IRF2BPLQ9H1B7 796 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 ZNF552Q9H707 407 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-206ENST00000376646 GCM1Q9NP62 436 aa3.83□□□□□ -1.8
VPS13A-206ENST00000376646 KIAA1522Q9P206 1035 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-206ENST00000376646 FADS2P1A8MWK0 482 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 SCAMP3O14828 347 aaKnown RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 ZNF205O95201 554 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 MED14OSP0DP75 135 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 GLDCP23378 1020 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 PMS1P54277 932 aaKnown RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 LINC00310P59036 64 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 ZNF445P59923 1031 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 HDLBPQ00341 1268 aaKnown RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 HSF5Q4G112 596 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 NT5DC4Q86YG4 428 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 MRRFQ96E11 262 aaKnown RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 FCRL2Q96LA5 508 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 ZNF451Q9Y4E5 1061 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 GSTM1P09488 218 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 GUCY2CP25092 1073 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 BMP8BP34820 402 aa3.82□□□□□ -1.8
VPS13A-206ENST00000376646 KIR2DL1P43626 348 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-206ENST00000376646 KIR2DL2P43627 348 aaPredicted RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms