RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 FEZ1Q99689 392 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 FTOQ9C0B1 505 aaKnown RBP eCLIP21.43■■□□□ 1.02
CLN3-206ENST00000360019 PAPPA2Q9BXP8 1791 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 NLRP5P59047 1200 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 FAM83BQ5T0W9 1011 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 USP28Q96RU2 1077 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 KIAA1683Q9H0B3 1180 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 PICK1Q9NRD5 415 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 ADAMTS3O15072 1205 aa21.42■■□□□ 1.02
CLN3-206ENST00000360019 KRT2P35908 639 aa21.42■■□□□ 1.02
CLN3-206ENST00000360019 BTNL9Q6UXG8 535 aa21.42■■□□□ 1.02
CLN3-206ENST00000360019 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.42■■□□□ 1.02
CLN3-206ENST00000360019 WDR18Q9BV38 432 aa21.42■■□□□ 1.02
CLN3-206ENST00000360019 PNMA6FA0A0J9YX94 578 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 ZBTB5O15062 677 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 PPP1R11O60927 126 aaPredicted RBP21.41■■□□□ 1.02
CLN3-206ENST00000360019 PTMSP20962 102 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 DGKZQ13574 1117 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 RRAGCQ9HB90 399 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 PPP1R12BO60237 982 aaPredicted RBP21.41■■□□□ 1.02
CLN3-206ENST00000360019 CEBPZQ03701 1054 aaKnown RBP21.41■■□□□ 1.02
CLN3-206ENST00000360019 SPP2Q13103 211 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 MTMR2Q13614 643 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 VGLL4Q14135 290 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 SYDE2Q5VT97 1194 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 ATL3Q6DD88 541 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 CCDC148Q8NFR7 591 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 TNFRSF25Q93038 417 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 ZNF396Q96N95 335 aaPredicted RBP21.41■■□□□ 1.02
CLN3-206ENST00000360019 SCAND2PQ9GZW5 306 aaPredicted RBP21.41■■□□□ 1.02
CLN3-206ENST00000360019 CFAP45Q9UL16 551 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 OTOFQ9HC10 1997 aa21.41■■□□□ 1.02
CLN3-206ENST00000360019 PHIPQ8WWQ0 1821 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 hCG_1984214I3L0E3 225 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 STAT2P52630 851 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 NAPAP54920 295 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 MAP3K9P80192 1104 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 IKQ13123 557 aaPredicted RBP21.4■■□□□ 1.02
CLN3-206ENST00000360019 EARS2Q5JPH6 523 aaKnown RBP21.4■■□□□ 1.02
CLN3-206ENST00000360019 FAM177A1Q8N128 213 aaPredicted RBP21.4■■□□□ 1.02
CLN3-206ENST00000360019 ZNF713Q8N859 430 aaPredicted RBP21.4■■□□□ 1.02
CLN3-206ENST00000360019 ZNF280CQ8ND82 737 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 LEO1Q8WVC0 666 aaPredicted RBP21.4■■□□□ 1.02
CLN3-206ENST00000360019 AS3MTQ9HBK9 375 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 BRMS1Q9HCU9 246 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 CLEC11AQ9Y240 323 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 SNCAIPQ9Y6H5 919 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 ZHX2Q9Y6X8 837 aa21.4■■□□□ 1.02
CLN3-206ENST00000360019 TRAK2O60296 914 aa21.39■■□□□ 1.02
CLN3-206ENST00000360019 GADD45BO75293 160 aaPredicted RBP21.39■■□□□ 1.02
CLN3-206ENST00000360019 CALML3P27482 149 aa21.39■■□□□ 1.02
CLN3-206ENST00000360019 CDC37Q16543 378 aaPredicted RBP21.39■■□□□ 1.02
CLN3-206ENST00000360019 QRICH1Q2TAL8 776 aa21.39■■□□□ 1.02
CLN3-206ENST00000360019 LPAR1Q92633 364 aa21.39■■□□□ 1.02
CLN3-206ENST00000360019 COA7Q96BR5 231 aa21.39■■□□□ 1.02
CLN3-206ENST00000360019 PRR12Q9ULL5 1215 aa21.39■■□□□ 1.02
CLN3-206ENST00000360019 PCDHA4Q9UN74 947 aa21.39■■□□□ 1.02
CLN3-206ENST00000360019 NF2P35240 595 aa21.39■■□□□ 1.01
CLN3-206ENST00000360019 MAP1SQ66K74 1059 aaPredicted RBP21.39■■□□□ 1.01
CLN3-206ENST00000360019 SPATA32Q96LK8 384 aa21.39■■□□□ 1.01
CLN3-206ENST00000360019 ZMYND12Q9H0C1 365 aa21.39■■□□□ 1.01
CLN3-206ENST00000360019 EMILIN3Q9NT22 766 aa21.39■■□□□ 1.01
CLN3-206ENST00000360019 ELP1O95163 1332 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 FAM205CA6NFA0 338 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 DCAF8L1A6NGE4 600 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 BACE1P56817 501 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 SNAP25P60880 206 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 CSPP1Q1MSJ5 1256 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 NOM1Q5C9Z4 860 aaKnown RBP21.38■■□□□ 1.01
CLN3-206ENST00000360019 MOB2Q70IA6 237 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 BLIDQ8IZY5 108 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 DAGLBQ8NCG7 672 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 CCDC12Q8WUD4 166 aaPredicted RBP21.38■■□□□ 1.01
CLN3-206ENST00000360019 RTEL1Q9NZ71 1219 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 CLIC4Q9Y696 253 aa21.38■■□□□ 1.01
CLN3-206ENST00000360019 TRIM75PA6NK02 468 aa21.37■■□□□ 1.01
CLN3-206ENST00000360019 M0R2N6 131 aa21.37■■□□□ 1.01
CLN3-206ENST00000360019 WDR46O15213 610 aaKnown RBP21.37■■□□□ 1.01
CLN3-206ENST00000360019 PLA2G6O60733 806 aa21.37■■□□□ 1.01
CLN3-206ENST00000360019 IREB2P48200 963 aaKnown RBP21.37■■□□□ 1.01
CLN3-206ENST00000360019 TOB1P50616 345 aaPredicted RBP21.37■■□□□ 1.01
CLN3-206ENST00000360019 GALNT17Q6IS24 598 aa21.37■■□□□ 1.01
CLN3-206ENST00000360019 POLR3EQ9NVU0 708 aa21.37■■□□□ 1.01
CLN3-206ENST00000360019 RCOR1Q9UKL0 485 aa21.37■■□□□ 1.01
CLN3-206ENST00000360019 SMCO2A6NFE2 343 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 VCAM1P19320 739 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 USP14P54578 494 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 GPT2Q8TD30 523 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 RASGRP4Q8TDF6 673 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 FBXO28Q9NVF7 368 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 AFG3L2Q9Y4W6 797 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 ESYT2A0FGR8 921 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 TRAF5O00463 557 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 NASPP49321 788 aaPredicted RBP21.36■■□□□ 1.01
CLN3-206ENST00000360019 MAP3K11Q16584 847 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 CHURC1Q8WUH1 139 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 NMRK2Q9NPI5 230 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 FEM1BQ9UK73 627 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 CSADQ9Y600 493 aa21.36■■□□□ 1.01
CLN3-206ENST00000360019 FMR1Q06787 632 aaKnown RBP eCLIP21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms