RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PNMA8AQ86V59 439 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-202ENST00000358808 NCAPG2Q86XI2 1143 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 SMYD2Q9NRG4 433 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 HESX1Q9UBX0 185 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 GLI2P10070 1586 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 ARHGAP4P98171 946 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 PAK1Q13153 545 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 LONRF2Q1L5Z9 754 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 FAM89AQ96GI7 184 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 PPFIA4O75335 1185 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 IFNB1P01574 187 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 PDE1AP54750 535 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 IRX4P78413 519 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 KLHL30Q0D2K2 578 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 RAB44Q7Z6P3 723 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-202ENST00000358808 BBS5Q8N3I7 341 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 KCNG1Q9UIX4 513 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 STK38LQ9Y2H1 464 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 A0A1B0GVL5 298 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 TTC4O95801 387 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 LMNB1P20700 586 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 GARSP41250 739 aaKnown RBP11.19□□□□□ -0.62
CLIP1-202ENST00000358808 OTUD7BQ6GQQ9 843 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 PEX26Q7Z412 305 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 ZBTB33Q86T24 672 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLIP1-202ENST00000358808 V9GY48 417 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-202ENST00000358808 FLOT1O75955 427 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 BAG2O95816 211 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 ALDH1B1P30837 517 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 EVCP57679 992 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 NONOQ15233 471 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLIP1-202ENST00000358808 ARHGAP27Q6ZUM4 889 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 DCPSQ96C86 337 aaKnown RBP11.19□□□□□ -0.62
CLIP1-202ENST00000358808 ORAI2Q96SN7 254 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 NUP58Q9BVL2 599 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 RIC8AQ9NPQ8 531 aa11.19□□□□□ -0.62
CLIP1-202ENST00000358808 KIF1BO60333 1816 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PPIP5K2O43314 1243 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PDE8AO60658 829 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PABPC4Q13310 644 aaKnown RBP eCLIP11.18□□□□□ -0.62
CLIP1-202ENST00000358808 SFMBT2Q5VUG0 894 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PGBD1Q96JS3 809 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 CSRNP1Q96S65 589 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PSMB7Q99436 277 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 GNGT2O14610 69 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 OPHN1O60890 802 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 STX2P32856 288 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 CCDC13Q8IYE1 715 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 CCPG1Q9ULG6 757 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 TTF2Q9UNY4 1162 aaKnown RBP11.18□□□□□ -0.62
CLIP1-202ENST00000358808 SH3TC1Q8TE82 1336 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 A0A1B0GUL7 405 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 KRT10P13645 584 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PUM3Q15397 648 aaKnown RBP11.18□□□□□ -0.62
CLIP1-202ENST00000358808 KRBA2Q6ZNG9 492 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 CAPN12Q6ZSI9 719 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 TAB3Q8N5C8 712 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PLBD2Q8NHP8 589 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 GBP5Q96PP8 586 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 A2ML1A8K2U0 1454 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 ARPP19P56211 112 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 RPS6KA1Q15418 735 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 PDCD2Q16342 344 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-202ENST00000358808 KRT25Q7Z3Z0 450 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 LCA5Q86VQ0 697 aa11.18□□□□□ -0.62
CLIP1-202ENST00000358808 TTC41PQ6P2S7 1318 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 GAS7O60861 476 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 CYP2J2P51589 502 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 HDAC1Q13547 482 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 MTMR3Q13615 1198 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 MUM1Q2TAK8 710 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 TTC38Q5R3I4 469 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 PARP2Q9UGN5 583 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 TET3O43151 1660 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 ZFYVE9O95405 1425 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 TLR3O15455 904 aaKnown RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 PTPREP23469 700 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 FGD4Q96M96 766 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 SUGCTQ9HAC7 445 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 SLC13A4Q9UKG4 626 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 INPP5BP32019 993 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 AK2P54819 239 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 ANKRD44Q8N8A2 993 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 GSTA4O15217 222 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 MYCP01106 439 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 RNASELQ05823 741 aaKnown RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 ZNF790Q6PG37 636 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 RAPH1Q70E73 1250 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 DDX17Q92841 729 aaKnown RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 SUCLA2Q9P2R7 463 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 CFAP65Q6ZU64 1925 aaKnown RBP11.17□□□□□ -0.62
CLIP1-202ENST00000358808 KDRP35968 1356 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 RNF40O75150 1001 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 KIAA1841Q6NSI8 718 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 RINT1Q6NUQ1 792 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 C1orf228Q6PIY5 440 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 GDAP1Q8TB36 358 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 U2AF1L4Q8WU68 220 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms