RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 RTEL1Q9NZ71 1219 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 ADM5C9JUS6 153 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 MBD3O95983 291 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 UBE2HP62256 183 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 TYW1BQ6NUM6 668 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 KRT26Q7Z3Y9 468 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 SCYL3Q8IZE3 742 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 SPICE1Q8N0Z3 855 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 GPT2Q8TD30 523 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 CCDC12Q8WUD4 166 aaPredicted RBP21.48■■□□□ 1.03
CLN3-204ENST00000357857 MTMR8Q96EF0 704 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 GLIS2Q9BZE0 524 aaPredicted RBP21.48■■□□□ 1.03
CLN3-204ENST00000357857 TAF1DQ9H5J8 278 aaPredicted RBP21.48■■□□□ 1.03
CLN3-204ENST00000357857 RCOR1Q9UKL0 485 aa21.48■■□□□ 1.03
CLN3-204ENST00000357857 PNMA6FA0A0J9YX94 578 aa21.47■■□□□ 1.03
CLN3-204ENST00000357857 USP17L10C9JJH3 530 aa21.47■■□□□ 1.03
CLN3-204ENST00000357857 NAPAP54920 295 aa21.47■■□□□ 1.03
CLN3-204ENST00000357857 KIAA1755Q5JYT7 1200 aa21.47■■□□□ 1.03
CLN3-204ENST00000357857 KLRG1Q96E93 195 aa21.47■■□□□ 1.03
CLN3-204ENST00000357857 FEZ1Q99689 392 aa21.47■■□□□ 1.03
CLN3-204ENST00000357857 POLR3EQ9NVU0 708 aa21.47■■□□□ 1.03
CLN3-204ENST00000357857 TMEM232C9JQI7 657 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 ZYXQ15942 572 aaKnown RBP21.46■■□□□ 1.03
CLN3-204ENST00000357857 GALNT17Q6IS24 598 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 PCDHA4Q9UN74 947 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 FZD1Q9UP38 647 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 PHIPQ8WWQ0 1821 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 POTECB2RU33 542 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 ZBTB5O15062 677 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 IKQ13123 557 aaPredicted RBP21.46■■□□□ 1.03
CLN3-204ENST00000357857 SYDE2Q5VT97 1194 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 ANO1Q5XXA6 986 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 BTNL9Q6UXG8 535 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 BLIDQ8IZY5 108 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 DAGLBQ8NCG7 672 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 TNFRSF25Q93038 417 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 ZKSCAN4Q969J2 545 aaPredicted RBP21.46■■□□□ 1.03
CLN3-204ENST00000357857 PICK1Q9NRD5 415 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 CLIC4Q9Y696 253 aa21.46■■□□□ 1.03
CLN3-204ENST00000357857 YEATS4O95619 227 aa21.45■■□□□ 1.02
CLN3-204ENST00000357857 NASPP49321 788 aaPredicted RBP21.45■■□□□ 1.02
CLN3-204ENST00000357857 EAPPQ56P03 285 aaPredicted RBP21.45■■□□□ 1.02
CLN3-204ENST00000357857 FAM83BQ5T0W9 1011 aa21.45■■□□□ 1.02
CLN3-204ENST00000357857 PAPPA2Q9BXP8 1791 aa21.44■■□□□ 1.02
CLN3-204ENST00000357857 STK38Q15208 465 aa21.44■■□□□ 1.02
CLN3-204ENST00000357857 RILPL1Q5EBL4 403 aa21.44■■□□□ 1.02
CLN3-204ENST00000357857 DLK2Q6UY11 383 aa21.44■■□□□ 1.02
CLN3-204ENST00000357857 PNMA8AQ86V59 439 aaPredicted RBP21.44■■□□□ 1.02
CLN3-204ENST00000357857 KIAA1683Q9H0B3 1180 aa21.44■■□□□ 1.02
CLN3-204ENST00000357857 ZMYND12Q9H0C1 365 aa21.44■■□□□ 1.02
CLN3-204ENST00000357857 OTOFQ9HC10 1997 aa21.44■■□□□ 1.02
CLN3-204ENST00000357857 USP2O75604 605 aaPredicted RBP21.43■■□□□ 1.02
CLN3-204ENST00000357857 STAT2P52630 851 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 PRKG1Q13976 671 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 CDC37Q16543 378 aaPredicted RBP21.43■■□□□ 1.02
CLN3-204ENST00000357857 NOL9Q5SY16 702 aaKnown RBP21.43■■□□□ 1.02
CLN3-204ENST00000357857 LINC00301Q8NCQ3 95 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 AS3MTQ9HBK9 375 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 C6orf50Q9HD87 102 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 ESYT2A0FGR8 921 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 GOLGA6L4A6NEF3 574 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 SMCO2A6NFE2 343 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 PTPRAP18433 802 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 GNA11P29992 359 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 QRICH1Q2TAL8 776 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 TPRNQ4KMQ1 711 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 PPP1R18Q6NYC8 613 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.43■■□□□ 1.02
CLN3-204ENST00000357857 COA7Q96BR5 231 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 WDR18Q9BV38 432 aa21.43■■□□□ 1.02
CLN3-204ENST00000357857 FAM205CA6NFA0 338 aa21.42■■□□□ 1.02
CLN3-204ENST00000357857 ADAMTS3O15072 1205 aa21.42■■□□□ 1.02
CLN3-204ENST00000357857 PPP1R11O60927 126 aaPredicted RBP21.42■■□□□ 1.02
CLN3-204ENST00000357857 TOB1P50616 345 aaPredicted RBP21.42■■□□□ 1.02
CLN3-204ENST00000357857 SF3A1Q15459 793 aaKnown RBP21.42■■□□□ 1.02
CLN3-204ENST00000357857 EARS2Q5JPH6 523 aaKnown RBP21.42■■□□□ 1.02
CLN3-204ENST00000357857 KCNG4Q8TDN1 519 aa21.42■■□□□ 1.02
CLN3-204ENST00000357857 CHURC1Q8WUH1 139 aa21.42■■□□□ 1.02
CLN3-204ENST00000357857 LPAR1Q92633 364 aa21.42■■□□□ 1.02
CLN3-204ENST00000357857 CDCA5Q96FF9 252 aa21.42■■□□□ 1.02
CLN3-204ENST00000357857 PGBD1Q96JS3 809 aa21.42■■□□□ 1.02
CLN3-204ENST00000357857 NOL7Q9UMY1 257 aaKnown RBP21.42■■□□□ 1.02
CLN3-204ENST00000357857 M0R2N6 131 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 PPP1R12BO60237 982 aaPredicted RBP21.41■■□□□ 1.02
CLN3-204ENST00000357857 PLA2G6O60733 806 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 PRR12Q9ULL5 1215 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 WDR46O15213 610 aaKnown RBP21.41■■□□□ 1.02
CLN3-204ENST00000357857 SPTLC2O15270 562 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 NF2P35240 595 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 USP14P54578 494 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 MAP3K9P80192 1104 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 SLC39A14Q15043 492 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 FAM160B2Q86V87 743 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 ZNF280CQ8ND82 737 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 BICD2Q8TD16 824 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 GZF1Q9H116 711 aaPredicted RBP21.41■■□□□ 1.02
CLN3-204ENST00000357857 FEM1BQ9UK73 627 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 PCDHA6Q9UN73 950 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 PCDHA8Q9Y5H6 950 aa21.41■■□□□ 1.02
CLN3-204ENST00000357857 ME1P48163 572 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms